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HS6ST3 (heparan sulfate 6-O-sulfotransferase 3)

Identity

Other aliasHS6ST-3
HGNC (Hugo) HS6ST3
LocusID (NCBI) 266722
Atlas_Id 64433
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 96090839 and ends at 96839562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCCA (13q32.3) / HS6ST3 (13q32.1)RPL4 (15q22.31) / HS6ST3 (13q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS6ST3   19134
Cards
Entrez_Gene (NCBI)HS6ST3  266722  heparan sulfate 6-O-sulfotransferase 3
AliasesHS6ST-3
GeneCards (Weizmann)HS6ST3
Ensembl hg19 (Hinxton)ENSG00000185352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185352 [Gene_View]  chr13:96090839-96839562 [Contig_View]  HS6ST3 [Vega]
ICGC DataPortalENSG00000185352
TCGA cBioPortalHS6ST3
AceView (NCBI)HS6ST3
Genatlas (Paris)HS6ST3
WikiGenes266722
SOURCE (Princeton)HS6ST3
Genetics Home Reference (NIH)HS6ST3
Genomic and cartography
GoldenPath hg38 (UCSC)HS6ST3  -     chr13:96090839-96839562 +  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS6ST3  -     13q32.1   [Description]    (hg19-Feb_2009)
EnsemblHS6ST3 - 13q32.1 [CytoView hg19]  HS6ST3 - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBIHS6ST3 [Mapview hg19]  HS6ST3 [Mapview hg38]
OMIM609401   
Gene and transcription
Genbank (Entrez)AF339796 AF339824 AF539426 AI937089 AK091343
RefSeq transcript (Entrez)NM_153456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HS6ST3
Cluster EST : UnigeneHs.740393 [ NCBI ]
CGAP (NCI)Hs.740393
Alternative Splicing GalleryENSG00000185352
Gene ExpressionHS6ST3 [ NCBI-GEO ]   HS6ST3 [ EBI - ARRAY_EXPRESS ]   HS6ST3 [ SEEK ]   HS6ST3 [ MEM ]
Gene Expression Viewer (FireBrowse)HS6ST3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266722
GTEX Portal (Tissue expression)HS6ST3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZP7
Splice isoforms : SwissVarQ8IZP7
PhosPhoSitePlusQ8IZP7
Domains : Interpro (EBI)Heparan_SO4-6-sulfoTrfase    P-loop_NTPase    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)HS6ST3
DMDM Disease mutations266722
Blocks (Seattle)HS6ST3
SuperfamilyQ8IZP7
Human Protein AtlasENSG00000185352
Peptide AtlasQ8IZP7
HPRD11030
IPIIPI00218046   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZP7
IntAct (EBI)Q8IZP7
FunCoupENSG00000185352
BioGRIDHS6ST3
STRING (EMBL)HS6ST3
ZODIACHS6ST3
Ontologies - Pathways
QuickGOQ8IZP7
Ontology : AmiGOheparan sulfate proteoglycan biosynthetic process, enzymatic modification  integral component of membrane  heparan sulfate 6-O-sulfotransferase activity  
Ontology : EGO-EBIheparan sulfate proteoglycan biosynthetic process, enzymatic modification  integral component of membrane  heparan sulfate 6-O-sulfotransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS6ST3
Atlas of Cancer Signalling NetworkHS6ST3
Wikipedia pathwaysHS6ST3
Orthology - Evolution
OrthoDB266722
GeneTree (enSembl)ENSG00000185352
Phylogenetic Trees/Animal Genes : TreeFamHS6ST3
HOVERGENQ8IZP7
HOGENOMQ8IZP7
Homologs : HomoloGeneHS6ST3
Homology/Alignments : Family Browser (UCSC)HS6ST3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS6ST3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS6ST3
dbVarHS6ST3
ClinVarHS6ST3
1000_GenomesHS6ST3 
Exome Variant ServerHS6ST3
ExAC (Exome Aggregation Consortium)HS6ST3 (select the gene name)
Genetic variants : HAPMAP266722
Genomic Variants (DGV)HS6ST3 [DGVbeta]
DECIPHERHS6ST3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHS6ST3 
Mutations
ICGC Data PortalHS6ST3 
TCGA Data PortalHS6ST3 
Broad Tumor PortalHS6ST3
OASIS PortalHS6ST3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS6ST3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS6ST3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS6ST3
DgiDB (Drug Gene Interaction Database)HS6ST3
DoCM (Curated mutations)HS6ST3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS6ST3 (select a term)
intoGenHS6ST3
Cancer3DHS6ST3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609401   
Orphanet
MedgenHS6ST3
Genetic Testing Registry HS6ST3
NextProtQ8IZP7 [Medical]
TSGene266722
GENETestsHS6ST3
Target ValidationHS6ST3
Huge Navigator HS6ST3 [HugePedia]
snp3D : Map Gene to Disease266722
BioCentury BCIQHS6ST3
ClinGenHS6ST3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD266722
Chemical/Pharm GKB GenePA134879312
Clinical trialHS6ST3
Miscellaneous
canSAR (ICR)HS6ST3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS6ST3
EVEXHS6ST3
GoPubMedHS6ST3
iHOPHS6ST3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:51 CEST 2017

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