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HSBP1 (heat shock factor binding protein 1)

Identity

Other aliasNPC-A-13
HGNC (Hugo) HSBP1
LocusID (NCBI) 3281
Atlas_Id 55192
Location 16q23.3  [Link to chromosome band 16q23]
Location_base_pair Starts at 83807903 and ends at 83813002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSBP1 (16q23.3) / HSBP1 (16q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSBP1   5203
Cards
Entrez_Gene (NCBI)HSBP1  3281  heat shock factor binding protein 1
AliasesNPC-A-13
GeneCards (Weizmann)HSBP1
Ensembl hg19 (Hinxton)ENSG00000230989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230989 [Gene_View]  chr16:83807903-83813002 [Contig_View]  HSBP1 [Vega]
ICGC DataPortalENSG00000230989
TCGA cBioPortalHSBP1
AceView (NCBI)HSBP1
Genatlas (Paris)HSBP1
WikiGenes3281
SOURCE (Princeton)HSBP1
Genetics Home Reference (NIH)HSBP1
Genomic and cartography
GoldenPath hg38 (UCSC)HSBP1  -     chr16:83807903-83813002 +  16q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSBP1  -     16q23.3   [Description]    (hg19-Feb_2009)
EnsemblHSBP1 - 16q23.3 [CytoView hg19]  HSBP1 - 16q23.3 [CytoView hg38]
Mapping of homologs : NCBIHSBP1 [Mapview hg19]  HSBP1 [Mapview hg38]
OMIM604553   
Gene and transcription
Genbank (Entrez)AF068754 AK026575 AK172732 AY320409 BC007515
RefSeq transcript (Entrez)NM_001537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSBP1
Cluster EST : UnigeneHs.250899 [ NCBI ]
CGAP (NCI)Hs.250899
Alternative Splicing GalleryENSG00000230989
Gene ExpressionHSBP1 [ NCBI-GEO ]   HSBP1 [ EBI - ARRAY_EXPRESS ]   HSBP1 [ SEEK ]   HSBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)HSBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3281
GTEX Portal (Tissue expression)HSBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75506   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75506  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75506
Splice isoforms : SwissVarO75506
PhosPhoSitePlusO75506
Domains : Interpro (EBI)4_helix_cytokine_core    HS1-bd   
Domain families : Pfam (Sanger)HSBP1 (PF06825)   
Domain families : Pfam (NCBI)pfam06825   
Conserved Domain (NCBI)HSBP1
DMDM Disease mutations3281
Blocks (Seattle)HSBP1
PDB (SRS)3CI9   
PDB (PDBSum)3CI9   
PDB (IMB)3CI9   
PDB (RSDB)3CI9   
Structural Biology KnowledgeBase3CI9   
SCOP (Structural Classification of Proteins)3CI9   
CATH (Classification of proteins structures)3CI9   
SuperfamilyO75506
Human Protein AtlasENSG00000230989
Peptide AtlasO75506
HPRD05185
IPIIPI00935516   
Protein Interaction databases
DIP (DOE-UCLA)O75506
IntAct (EBI)O75506
FunCoupENSG00000230989
BioGRIDHSBP1
STRING (EMBL)HSBP1
ZODIACHSBP1
Ontologies - Pathways
QuickGOO75506
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoskeleton  muscle contraction  endodermal cell differentiation  identical protein binding  regulation of cellular response to heat  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoskeleton  muscle contraction  endodermal cell differentiation  identical protein binding  regulation of cellular response to heat  
NDEx NetworkHSBP1
Atlas of Cancer Signalling NetworkHSBP1
Wikipedia pathwaysHSBP1
Orthology - Evolution
OrthoDB3281
GeneTree (enSembl)ENSG00000230989
Phylogenetic Trees/Animal Genes : TreeFamHSBP1
HOVERGENO75506
HOGENOMO75506
Homologs : HomoloGeneHSBP1
Homology/Alignments : Family Browser (UCSC)HSBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSBP1
dbVarHSBP1
ClinVarHSBP1
1000_GenomesHSBP1 
Exome Variant ServerHSBP1
ExAC (Exome Aggregation Consortium)HSBP1 (select the gene name)
Genetic variants : HAPMAP3281
Genomic Variants (DGV)HSBP1 [DGVbeta]
DECIPHERHSBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSBP1 
Mutations
ICGC Data PortalHSBP1 
TCGA Data PortalHSBP1 
Broad Tumor PortalHSBP1
OASIS PortalHSBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSBP1
DgiDB (Drug Gene Interaction Database)HSBP1
DoCM (Curated mutations)HSBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSBP1 (select a term)
intoGenHSBP1
Cancer3DHSBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604553   
Orphanet
MedgenHSBP1
Genetic Testing Registry HSBP1
NextProtO75506 [Medical]
TSGene3281
GENETestsHSBP1
Huge Navigator HSBP1 [HugePedia]
snp3D : Map Gene to Disease3281
BioCentury BCIQHSBP1
ClinGenHSBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3281
Chemical/Pharm GKB GenePA29475
Clinical trialHSBP1
Miscellaneous
canSAR (ICR)HSBP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSBP1
EVEXHSBP1
GoPubMedHSBP1
iHOPHSBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:31 CEST 2017

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