Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HSBP1L1 (heat shock factor binding protein 1 like 1)

Identity

Alias_symbol (synonym)FLJ10967
MGC189743
Other alias-
HGNC (Hugo) HSBP1L1
LocusID (NCBI) 440498
Atlas_Id 56506
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 77724582 and ends at 77730822 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PQLC1 (18q23) / HSBP1L1 (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSBP1L1   37243
Cards
Entrez_Gene (NCBI)HSBP1L1  440498  heat shock factor binding protein 1 like 1
Aliases
GeneCards (Weizmann)HSBP1L1
Ensembl hg19 (Hinxton)ENSG00000226742 [Gene_View]  chr18:77724582-77730822 [Contig_View]  HSBP1L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000226742 [Gene_View]  chr18:77724582-77730822 [Contig_View]  HSBP1L1 [Vega]
ICGC DataPortalENSG00000226742
TCGA cBioPortalHSBP1L1
AceView (NCBI)HSBP1L1
Genatlas (Paris)HSBP1L1
WikiGenes440498
SOURCE (Princeton)HSBP1L1
Genetics Home Reference (NIH)HSBP1L1
Genomic and cartography
GoldenPath hg19 (UCSC)HSBP1L1  -     chr18:77724582-77730822 +  18q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSBP1L1  -     18q23   [Description]    (hg38-Dec_2013)
EnsemblHSBP1L1 - 18q23 [CytoView hg19]  HSBP1L1 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIHSBP1L1 [Mapview hg19]  HSBP1L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136180
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSBP1L1
Cluster EST : UnigeneHs.191582 [ NCBI ]
CGAP (NCI)Hs.191582
Alternative Splicing GalleryENSG00000226742
Gene ExpressionHSBP1L1 [ NCBI-GEO ]   HSBP1L1 [ EBI - ARRAY_EXPRESS ]   HSBP1L1 [ SEEK ]   HSBP1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)HSBP1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440498
GTEX Portal (Tissue expression)HSBP1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JCN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JCN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JCN9
Splice isoforms : SwissVarC9JCN9
PhosPhoSitePlusC9JCN9
Domains : Interpro (EBI)HS1-bd   
Domain families : Pfam (Sanger)HSBP1 (PF06825)   
Domain families : Pfam (NCBI)pfam06825   
Conserved Domain (NCBI)HSBP1L1
DMDM Disease mutations440498
Blocks (Seattle)HSBP1L1
SuperfamilyC9JCN9
Human Protein AtlasENSG00000226742
Peptide AtlasC9JCN9
IPIIPI00942280   IPI00985247   
Protein Interaction databases
DIP (DOE-UCLA)C9JCN9
IntAct (EBI)C9JCN9
FunCoupENSG00000226742
BioGRIDHSBP1L1
STRING (EMBL)HSBP1L1
ZODIACHSBP1L1
Ontologies - Pathways
QuickGOC9JCN9
Ontology : AmiGOtranscription corepressor activity  viral envelope  fusion of virus membrane with host plasma membrane  host cell surface receptor binding  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription corepressor activity  viral envelope  fusion of virus membrane with host plasma membrane  host cell surface receptor binding  negative regulation of nucleic acid-templated transcription  
NDEx NetworkHSBP1L1
Atlas of Cancer Signalling NetworkHSBP1L1
Wikipedia pathwaysHSBP1L1
Orthology - Evolution
OrthoDB440498
GeneTree (enSembl)ENSG00000226742
Phylogenetic Trees/Animal Genes : TreeFamHSBP1L1
HOVERGENC9JCN9
HOGENOMC9JCN9
Homologs : HomoloGeneHSBP1L1
Homology/Alignments : Family Browser (UCSC)HSBP1L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSBP1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSBP1L1
dbVarHSBP1L1
ClinVarHSBP1L1
1000_GenomesHSBP1L1 
Exome Variant ServerHSBP1L1
ExAC (Exome Aggregation Consortium)HSBP1L1 (select the gene name)
Genetic variants : HAPMAP440498
Genomic Variants (DGV)HSBP1L1 [DGVbeta]
DECIPHER (Syndromes)18:77724582-77730822  ENSG00000226742
CONAN: Copy Number AnalysisHSBP1L1 
Mutations
ICGC Data PortalHSBP1L1 
TCGA Data PortalHSBP1L1 
Broad Tumor PortalHSBP1L1
OASIS PortalHSBP1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSBP1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSBP1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSBP1L1
DgiDB (Drug Gene Interaction Database)HSBP1L1
DoCM (Curated mutations)HSBP1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSBP1L1 (select a term)
intoGenHSBP1L1
Cancer3DHSBP1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSBP1L1
Genetic Testing Registry HSBP1L1
NextProtC9JCN9 [Medical]
TSGene440498
GENETestsHSBP1L1
Huge Navigator HSBP1L1 [HugePedia]
snp3D : Map Gene to Disease440498
BioCentury BCIQHSBP1L1
ClinGenHSBP1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440498
Chemical/Pharm GKB GenePA165429036
Clinical trialHSBP1L1
Miscellaneous
canSAR (ICR)HSBP1L1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSBP1L1
EVEXHSBP1L1
GoPubMedHSBP1L1
iHOPHSBP1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:47 CET 2017

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