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HSD52 (uncharacterized LOC729467)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 729467
Atlas_Id 64440
Location 1p32.1  [Link to chromosome band 1p32]
Location_base_pair Starts at 59131936 and ends at 59146807 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HSD52  729467  uncharacterized LOC729467
Aliases
GeneCards (Weizmann)HSD52
Ensembl hg19 (Hinxton)ENSG00000224609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224609 [Gene_View]  chr1:59131936-59146807 [Contig_View]  HSD52 [Vega]
ICGC DataPortalENSG00000224609
TCGA cBioPortalHSD52
AceView (NCBI)HSD52
Genatlas (Paris)HSD52
WikiGenes729467
SOURCE (Princeton)HSD52
Genetics Home Reference (NIH)HSD52
Genomic and cartography
GoldenPath hg38 (UCSC)HSD52  -     chr1:59131936-59146807 -  1p32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSD52  -     1p32.1   [Description]    (hg19-Feb_2009)
EnsemblHSD52 - 1p32.1 [CytoView hg19]  HSD52 - 1p32.1 [CytoView hg38]
Mapping of homologs : NCBIHSD52 [Mapview hg19]  HSD52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB453888 DQ141102
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSD52
Cluster EST : UnigeneHs.662291 [ NCBI ]
CGAP (NCI)Hs.662291
Alternative Splicing GalleryENSG00000224609
Gene ExpressionHSD52 [ NCBI-GEO ]   HSD52 [ EBI - ARRAY_EXPRESS ]   HSD52 [ SEEK ]   HSD52 [ MEM ]
Gene Expression Viewer (FireBrowse)HSD52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729467
GTEX Portal (Tissue expression)HSD52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P140   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P140  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P140
Splice isoforms : SwissVarQ0P140
PhosPhoSitePlusQ0P140
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HSD52
DMDM Disease mutations729467
Blocks (Seattle)HSD52
SuperfamilyQ0P140
Human Protein AtlasENSG00000224609
Peptide AtlasQ0P140
IPIIPI00787432   
Protein Interaction databases
DIP (DOE-UCLA)Q0P140
IntAct (EBI)Q0P140
FunCoupENSG00000224609
BioGRIDHSD52
STRING (EMBL)HSD52
ZODIACHSD52
Ontologies - Pathways
QuickGOQ0P140
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHSD52
Atlas of Cancer Signalling NetworkHSD52
Wikipedia pathwaysHSD52
Orthology - Evolution
OrthoDB729467
GeneTree (enSembl)ENSG00000224609
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ0P140
HOGENOMQ0P140
Homologs : HomoloGeneHSD52
Homology/Alignments : Family Browser (UCSC)HSD52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSD52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSD52
dbVarHSD52
ClinVarHSD52
1000_GenomesHSD52 
Exome Variant ServerHSD52
ExAC (Exome Aggregation Consortium)HSD52 (select the gene name)
Genetic variants : HAPMAP729467
Genomic Variants (DGV)HSD52 [DGVbeta]
DECIPHERHSD52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSD52 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch HSD52
DgiDB (Drug Gene Interaction Database)HSD52
DoCM (Curated mutations)HSD52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSD52 (select a term)
intoGenHSD52
Cancer3DHSD52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSD52
Genetic Testing Registry HSD52
NextProtQ0P140 [Medical]
TSGene729467
GENETestsHSD52
Target ValidationHSD52
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease729467
BioCentury BCIQHSD52
ClinGenHSD52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729467
Clinical trialHSD52
Miscellaneous
canSAR (ICR)HSD52 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSD52
EVEXHSD52
GoPubMedHSD52
iHOPHSD52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:49 CEST 2017

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