Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HSDL1 (hydroxysteroid dehydrogenase like 1)

Identity

Alias_symbol (synonym)SDR12C3
Other alias
HGNC (Hugo) HSDL1
LocusID (NCBI) 83693
Atlas_Id 64441
Location 16q23.3  [Link to chromosome band 16q23]
Location_base_pair Starts at 84155744 and ends at 84178800 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSDL1   16475
Cards
Entrez_Gene (NCBI)HSDL1  83693  hydroxysteroid dehydrogenase like 1
AliasesSDR12C3
GeneCards (Weizmann)HSDL1
Ensembl hg19 (Hinxton)ENSG00000103160 [Gene_View]  chr16:84155744-84178800 [Contig_View]  HSDL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103160 [Gene_View]  chr16:84155744-84178800 [Contig_View]  HSDL1 [Vega]
ICGC DataPortalENSG00000103160
TCGA cBioPortalHSDL1
AceView (NCBI)HSDL1
Genatlas (Paris)HSDL1
WikiGenes83693
SOURCE (Princeton)HSDL1
Genetics Home Reference (NIH)HSDL1
Genomic and cartography
GoldenPath hg19 (UCSC)HSDL1  -     chr16:84155744-84178800 -  16q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSDL1  -     16q23.3   [Description]    (hg38-Dec_2013)
EnsemblHSDL1 - 16q23.3 [CytoView hg19]  HSDL1 - 16q23.3 [CytoView hg38]
Mapping of homologs : NCBIHSDL1 [Mapview hg19]  HSDL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF237684 AK025626 AK074878 AK098199 AK299798
RefSeq transcript (Entrez)NM_001146051 NM_031463
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)HSDL1
Cluster EST : UnigeneHs.555992 [ NCBI ]
CGAP (NCI)Hs.555992
Alternative Splicing GalleryENSG00000103160
Gene ExpressionHSDL1 [ NCBI-GEO ]   HSDL1 [ EBI - ARRAY_EXPRESS ]   HSDL1 [ SEEK ]   HSDL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HSDL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83693
GTEX Portal (Tissue expression)HSDL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXM5
Splice isoforms : SwissVarQ3SXM5
PhosPhoSitePlusQ3SXM5
Domains : Interpro (EBI)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom   
Domain families : Pfam (Sanger)adh_short (PF00106)   
Domain families : Pfam (NCBI)pfam00106   
Conserved Domain (NCBI)HSDL1
DMDM Disease mutations83693
Blocks (Seattle)HSDL1
SuperfamilyQ3SXM5
Human Protein AtlasENSG00000103160
Peptide AtlasQ3SXM5
HPRD17117
IPIIPI00171459   IPI00909286   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXM5
IntAct (EBI)Q3SXM5
FunCoupENSG00000103160
BioGRIDHSDL1
STRING (EMBL)HSDL1
ZODIACHSDL1
Ontologies - Pathways
QuickGOQ3SXM5
Ontology : AmiGOmitochondrion  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBImitochondrion  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkHSDL1
Atlas of Cancer Signalling NetworkHSDL1
Wikipedia pathwaysHSDL1
Orthology - Evolution
OrthoDB83693
GeneTree (enSembl)ENSG00000103160
Phylogenetic Trees/Animal Genes : TreeFamHSDL1
HOVERGENQ3SXM5
HOGENOMQ3SXM5
Homologs : HomoloGeneHSDL1
Homology/Alignments : Family Browser (UCSC)HSDL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSDL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSDL1
dbVarHSDL1
ClinVarHSDL1
1000_GenomesHSDL1 
Exome Variant ServerHSDL1
ExAC (Exome Aggregation Consortium)HSDL1 (select the gene name)
Genetic variants : HAPMAP83693
Genomic Variants (DGV)HSDL1 [DGVbeta]
DECIPHER (Syndromes)16:84155744-84178800  ENSG00000103160
CONAN: Copy Number AnalysisHSDL1 
Mutations
ICGC Data PortalHSDL1 
TCGA Data PortalHSDL1 
Broad Tumor PortalHSDL1
OASIS PortalHSDL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSDL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSDL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch HSDL1
DgiDB (Drug Gene Interaction Database)HSDL1
DoCM (Curated mutations)HSDL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSDL1 (select a term)
intoGenHSDL1
Cancer3DHSDL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSDL1
Genetic Testing Registry HSDL1
NextProtQ3SXM5 [Medical]
TSGene83693
GENETestsHSDL1
Huge Navigator HSDL1 [HugePedia]
snp3D : Map Gene to Disease83693
BioCentury BCIQHSDL1
ClinGenHSDL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83693
Chemical/Pharm GKB GenePA134988345
Clinical trialHSDL1
Miscellaneous
canSAR (ICR)HSDL1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSDL1
EVEXHSDL1
GoPubMedHSDL1
iHOPHSDL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.