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HSDL2 (hydroxysteroid dehydrogenase like 2)

Identity

Alias_namesC9orf99
chromosome 9 open reading frame 99
Alias_symbol (synonym)SDR13C1
Other alias
HGNC (Hugo) HSDL2
LocusID (NCBI) 84263
Atlas_Id 64442
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 115142189 and ends at 115234685 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HSDL2 (9q32) / FRMD3 (9q21.32)KIAA1958 (9q32) / HSDL2 (9q32)PAN3 (13q12.2) / HSDL2 (9q32)
USP34 (2p15) / HSDL2 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSDL2   18572
Cards
Entrez_Gene (NCBI)HSDL2  84263  hydroxysteroid dehydrogenase like 2
AliasesC9orf99; SDR13C1
GeneCards (Weizmann)HSDL2
Ensembl hg19 (Hinxton)ENSG00000119471 [Gene_View]  chr9:115142189-115234685 [Contig_View]  HSDL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119471 [Gene_View]  chr9:115142189-115234685 [Contig_View]  HSDL2 [Vega]
ICGC DataPortalENSG00000119471
TCGA cBioPortalHSDL2
AceView (NCBI)HSDL2
Genatlas (Paris)HSDL2
WikiGenes84263
SOURCE (Princeton)HSDL2
Genetics Home Reference (NIH)HSDL2
Genomic and cartography
GoldenPath hg19 (UCSC)HSDL2  -     chr9:115142189-115234685 +  9q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSDL2  -     9q32   [Description]    (hg38-Dec_2013)
EnsemblHSDL2 - 9q32 [CytoView hg19]  HSDL2 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIHSDL2 [Mapview hg19]  HSDL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090940 AK098721 AK225946 AK289929 AK292486
RefSeq transcript (Entrez)NM_001195822 NM_032303
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)HSDL2
Cluster EST : UnigeneHs.59486 [ NCBI ]
CGAP (NCI)Hs.59486
Alternative Splicing GalleryENSG00000119471
Gene ExpressionHSDL2 [ NCBI-GEO ]   HSDL2 [ EBI - ARRAY_EXPRESS ]   HSDL2 [ SEEK ]   HSDL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HSDL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84263
GTEX Portal (Tissue expression)HSDL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6YN16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6YN16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6YN16
Splice isoforms : SwissVarQ6YN16
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ6YN16
Domaine pattern : Prosite (Expaxy)ADH_SHORT (PS00061)   
Domains : Interpro (EBI)DH_sc/Rdtase_SDR    Glc/ribitol_DH    NAD(P)-bd_dom    Sc_DH/Rdtase_CS    SCP2_sterol-bd_dom   
Domain families : Pfam (Sanger)adh_short (PF00106)    SCP2 (PF02036)   
Domain families : Pfam (NCBI)pfam00106    pfam02036   
Conserved Domain (NCBI)HSDL2
DMDM Disease mutations84263
Blocks (Seattle)HSDL2
PDB (SRS)3KVO   
PDB (PDBSum)3KVO   
PDB (IMB)3KVO   
PDB (RSDB)3KVO   
Structural Biology KnowledgeBase3KVO   
SCOP (Structural Classification of Proteins)3KVO   
CATH (Classification of proteins structures)3KVO   
SuperfamilyQ6YN16
Human Protein AtlasENSG00000119471
Peptide AtlasQ6YN16
HPRD13679
IPIIPI00414384   IPI00031107   IPI01013700   
Protein Interaction databases
DIP (DOE-UCLA)Q6YN16
IntAct (EBI)Q6YN16
FunCoupENSG00000119471
BioGRIDHSDL2
STRING (EMBL)HSDL2
ZODIACHSDL2
Ontologies - Pathways
QuickGOQ6YN16
Ontology : AmiGOmolecular_function  mitochondrion  peroxisome  biological_process  membrane  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBImolecular_function  mitochondrion  peroxisome  biological_process  membrane  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkHSDL2
Atlas of Cancer Signalling NetworkHSDL2
Wikipedia pathwaysHSDL2
Orthology - Evolution
OrthoDB84263
GeneTree (enSembl)ENSG00000119471
Phylogenetic Trees/Animal Genes : TreeFamHSDL2
HOVERGENQ6YN16
HOGENOMQ6YN16
Homologs : HomoloGeneHSDL2
Homology/Alignments : Family Browser (UCSC)HSDL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSDL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSDL2
dbVarHSDL2
ClinVarHSDL2
1000_GenomesHSDL2 
Exome Variant ServerHSDL2
ExAC (Exome Aggregation Consortium)HSDL2 (select the gene name)
Genetic variants : HAPMAP84263
Genomic Variants (DGV)HSDL2 [DGVbeta]
DECIPHER (Syndromes)9:115142189-115234685  ENSG00000119471
CONAN: Copy Number AnalysisHSDL2 
Mutations
ICGC Data PortalHSDL2 
TCGA Data PortalHSDL2 
Broad Tumor PortalHSDL2
OASIS PortalHSDL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSDL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSDL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch HSDL2
DgiDB (Drug Gene Interaction Database)HSDL2
DoCM (Curated mutations)HSDL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSDL2 (select a term)
intoGenHSDL2
Cancer3DHSDL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSDL2
Genetic Testing Registry HSDL2
NextProtQ6YN16 [Medical]
TSGene84263
GENETestsHSDL2
Huge Navigator HSDL2 [HugePedia]
snp3D : Map Gene to Disease84263
BioCentury BCIQHSDL2
ClinGenHSDL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84263
Chemical/Pharm GKB GenePA134980105
Clinical trialHSDL2
Miscellaneous
canSAR (ICR)HSDL2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSDL2
EVEXHSDL2
GoPubMedHSDL2
iHOPHSDL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:16 CET 2017

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