Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HSF2BP (heat shock transcription factor 2 binding protein)

Identity

Alias (NCBI)-
HGNC (Hugo) HSF2BP
HGNC Alias nameheat shock factor 2 binding protein
LocusID (NCBI) 11077
Atlas_Id 64443
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43529192 and ends at 43659493 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF345 (19q13.12) / HSF2BP (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(19;21)(q13;q22) ZNF345/HSF2BP

External links

Nomenclature
HGNC (Hugo)HSF2BP   5226
Cards
Entrez_Gene (NCBI)HSF2BP    heat shock transcription factor 2 binding protein
Aliases
GeneCards (Weizmann)HSF2BP
Ensembl hg19 (Hinxton)ENSG00000160207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160207 [Gene_View]  ENSG00000160207 [Sequence]  chr21:43529192-43659493 [Contig_View]  HSF2BP [Vega]
ICGC DataPortalENSG00000160207
TCGA cBioPortalHSF2BP
AceView (NCBI)HSF2BP
Genatlas (Paris)HSF2BP
SOURCE (Princeton)HSF2BP
Genetics Home Reference (NIH)HSF2BP
Genomic and cartography
GoldenPath hg38 (UCSC)HSF2BP  -     chr21:43529192-43659493 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSF2BP  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathHSF2BP - 21q22.3 [CytoView hg19]  HSF2BP - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160207
genome Data Viewer NCBIHSF2BP [Mapview hg19]  
OMIM604554   
Gene and transcription
Genbank (Entrez)AB007131 AK301795 AK314121 BC000153 CR457067
RefSeq transcript (Entrez)NM_007031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSF2BP
Alternative Splicing GalleryENSG00000160207
Gene ExpressionHSF2BP [ NCBI-GEO ]   HSF2BP [ EBI - ARRAY_EXPRESS ]   HSF2BP [ SEEK ]   HSF2BP [ MEM ]
Gene Expression Viewer (FireBrowse)HSF2BP [ Firebrowse - Broad ]
GenevisibleExpression of HSF2BP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11077
GTEX Portal (Tissue expression)HSF2BP
Human Protein AtlasENSG00000160207-HSF2BP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75031   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75031  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75031
Splice isoforms : SwissVarO75031
PhosPhoSitePlusO75031
Domains : Interpro (EBI)ARM-like    ARM-type_fold    HSF2BP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HSF2BP
Blocks (Seattle)HSF2BP
SuperfamilyO75031
Human Protein Atlas [tissue]ENSG00000160207-HSF2BP [tissue]
Peptide AtlasO75031
HPRD05186
IPIIPI00023897   IPI01012712   IPI00789323   
Protein Interaction databases
DIP (DOE-UCLA)O75031
IntAct (EBI)O75031
BioGRIDHSF2BP
STRING (EMBL)HSF2BP
ZODIACHSF2BP
Ontologies - Pathways
QuickGOO75031
Ontology : AmiGOprotein binding  cytosol  transcription by RNA polymerase II  spermatogenesis  
Ontology : EGO-EBIprotein binding  cytosol  transcription by RNA polymerase II  spermatogenesis  
NDEx NetworkHSF2BP
Atlas of Cancer Signalling NetworkHSF2BP
Wikipedia pathwaysHSF2BP
Orthology - Evolution
OrthoDB11077
GeneTree (enSembl)ENSG00000160207
Phylogenetic Trees/Animal Genes : TreeFamHSF2BP
HOGENOMO75031
Homologs : HomoloGeneHSF2BP
Homology/Alignments : Family Browser (UCSC)HSF2BP
Gene fusions - Rearrangements
Fusion : QuiverHSF2BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSF2BP [hg38]
dbVarHSF2BP
ClinVarHSF2BP
MonarchHSF2BP
1000_GenomesHSF2BP 
Exome Variant ServerHSF2BP
GNOMAD BrowserENSG00000160207
Varsome BrowserHSF2BP
Genomic Variants (DGV)HSF2BP [DGVbeta]
DECIPHERHSF2BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSF2BP 
Mutations
ICGC Data PortalHSF2BP 
TCGA Data PortalHSF2BP 
Broad Tumor PortalHSF2BP
OASIS PortalHSF2BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSF2BP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHSF2BP
Mutations and Diseases : HGMDHSF2BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSF2BP
DgiDB (Drug Gene Interaction Database)HSF2BP
DoCM (Curated mutations)HSF2BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSF2BP (select a term)
intoGenHSF2BP
Cancer3DHSF2BP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604554   
Orphanet
DisGeNETHSF2BP
MedgenHSF2BP
Genetic Testing Registry HSF2BP
NextProtO75031 [Medical]
GENETestsHSF2BP
Target ValidationHSF2BP
Huge Navigator HSF2BP [HugePedia]
ClinGenHSF2BP
Clinical trials, drugs, therapy
MyCancerGenomeHSF2BP
Protein Interactions : CTD
Pharm GKB GenePA29495
Clinical trialHSF2BP
Miscellaneous
canSAR (ICR)HSF2BP (select the gene name)
HarmonizomeHSF2BP
DataMed IndexHSF2BP
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSF2BP
EVEXHSF2BP
GoPubMedHSF2BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:57:19 CET 2020
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