Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HSF2BP (heat shock transcription factor 2 binding protein)

Identity

Other alias-
HGNC (Hugo) HSF2BP
LocusID (NCBI) 11077
Atlas_Id 64443
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43529192 and ends at 43659493 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF345 (19q13.12) / HSF2BP (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSF2BP   5226
Cards
Entrez_Gene (NCBI)HSF2BP  11077  heat shock transcription factor 2 binding protein
Aliases
GeneCards (Weizmann)HSF2BP
Ensembl hg19 (Hinxton)ENSG00000160207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160207 [Gene_View]  chr21:43529192-43659493 [Contig_View]  HSF2BP [Vega]
ICGC DataPortalENSG00000160207
TCGA cBioPortalHSF2BP
AceView (NCBI)HSF2BP
Genatlas (Paris)HSF2BP
WikiGenes11077
SOURCE (Princeton)HSF2BP
Genetics Home Reference (NIH)HSF2BP
Genomic and cartography
GoldenPath hg38 (UCSC)HSF2BP  -     chr21:43529192-43659493 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSF2BP  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblHSF2BP - 21q22.3 [CytoView hg19]  HSF2BP - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIHSF2BP [Mapview hg19]  HSF2BP [Mapview hg38]
OMIM604554   
Gene and transcription
Genbank (Entrez)AB007131 AK301795 AK314121 BC000153 CR457067
RefSeq transcript (Entrez)NM_007031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSF2BP
Cluster EST : UnigeneHs.406157 [ NCBI ]
CGAP (NCI)Hs.406157
Alternative Splicing GalleryENSG00000160207
Gene ExpressionHSF2BP [ NCBI-GEO ]   HSF2BP [ EBI - ARRAY_EXPRESS ]   HSF2BP [ SEEK ]   HSF2BP [ MEM ]
Gene Expression Viewer (FireBrowse)HSF2BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11077
GTEX Portal (Tissue expression)HSF2BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75031   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75031  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75031
Splice isoforms : SwissVarO75031
PhosPhoSitePlusO75031
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HSF2BP
DMDM Disease mutations11077
Blocks (Seattle)HSF2BP
SuperfamilyO75031
Human Protein AtlasENSG00000160207
Peptide AtlasO75031
HPRD05186
IPIIPI00023897   IPI01012712   IPI00789323   
Protein Interaction databases
DIP (DOE-UCLA)O75031
IntAct (EBI)O75031
FunCoupENSG00000160207
BioGRIDHSF2BP
STRING (EMBL)HSF2BP
ZODIACHSF2BP
Ontologies - Pathways
QuickGOO75031
Ontology : AmiGOprotein binding  cytosol  transcription from RNA polymerase II promoter  spermatogenesis  
Ontology : EGO-EBIprotein binding  cytosol  transcription from RNA polymerase II promoter  spermatogenesis  
NDEx NetworkHSF2BP
Atlas of Cancer Signalling NetworkHSF2BP
Wikipedia pathwaysHSF2BP
Orthology - Evolution
OrthoDB11077
GeneTree (enSembl)ENSG00000160207
Phylogenetic Trees/Animal Genes : TreeFamHSF2BP
HOVERGENO75031
HOGENOMO75031
Homologs : HomoloGeneHSF2BP
Homology/Alignments : Family Browser (UCSC)HSF2BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSF2BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSF2BP
dbVarHSF2BP
ClinVarHSF2BP
1000_GenomesHSF2BP 
Exome Variant ServerHSF2BP
ExAC (Exome Aggregation Consortium)HSF2BP (select the gene name)
Genetic variants : HAPMAP11077
Genomic Variants (DGV)HSF2BP [DGVbeta]
DECIPHERHSF2BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSF2BP 
Mutations
ICGC Data PortalHSF2BP 
TCGA Data PortalHSF2BP 
Broad Tumor PortalHSF2BP
OASIS PortalHSF2BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSF2BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSF2BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSF2BP
DgiDB (Drug Gene Interaction Database)HSF2BP
DoCM (Curated mutations)HSF2BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSF2BP (select a term)
intoGenHSF2BP
Cancer3DHSF2BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604554   
Orphanet
MedgenHSF2BP
Genetic Testing Registry HSF2BP
NextProtO75031 [Medical]
TSGene11077
GENETestsHSF2BP
Huge Navigator HSF2BP [HugePedia]
snp3D : Map Gene to Disease11077
BioCentury BCIQHSF2BP
ClinGenHSF2BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11077
Chemical/Pharm GKB GenePA29495
Clinical trialHSF2BP
Miscellaneous
canSAR (ICR)HSF2BP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSF2BP
EVEXHSF2BP
GoPubMedHSF2BP
iHOPHSF2BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:16:12 CEST 2017

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