Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HSF5 (heat shock transcription factor 5)

Identity

Alias_namesheat shock transcription factor family member 5
Alias_symbol (synonym)FLJ40311
Other aliasHSF 5
HSTF 5
HGNC (Hugo) HSF5
LocusID (NCBI) 124535
Atlas_Id 64444
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58420167 and ends at 58488401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSF5 (17q22) / TRAPPC4 (11q23.3)NOL11 (17q24.2) / HSF5 (17q22)RNF43 (17q22) / HSF5 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSF5   26862
Cards
Entrez_Gene (NCBI)HSF5  124535  heat shock transcription factor 5
AliasesHSF; HSTF
GeneCards (Weizmann)HSF5
Ensembl hg19 (Hinxton)ENSG00000176160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176160 [Gene_View]  chr17:58420167-58488401 [Contig_View]  HSF5 [Vega]
ICGC DataPortalENSG00000176160
TCGA cBioPortalHSF5
AceView (NCBI)HSF5
Genatlas (Paris)HSF5
WikiGenes124535
SOURCE (Princeton)HSF5
Genetics Home Reference (NIH)HSF5
Genomic and cartography
GoldenPath hg38 (UCSC)HSF5  -     chr17:58420167-58488401 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSF5  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblHSF5 - 17q22 [CytoView hg19]  HSF5 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIHSF5 [Mapview hg19]  HSF5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL137385 BC033017 BC033020 BC115385 BC115386
RefSeq transcript (Entrez)NM_001080439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSF5
Cluster EST : UnigeneHs.380061 [ NCBI ]
CGAP (NCI)Hs.380061
Alternative Splicing GalleryENSG00000176160
Gene ExpressionHSF5 [ NCBI-GEO ]   HSF5 [ EBI - ARRAY_EXPRESS ]   HSF5 [ SEEK ]   HSF5 [ MEM ]
Gene Expression Viewer (FireBrowse)HSF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124535
GTEX Portal (Tissue expression)HSF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G112
Splice isoforms : SwissVarQ4G112
PhosPhoSitePlusQ4G112
Domains : Interpro (EBI)HSF5    HSF_DNA-bd    HSF_fam    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSF5
DMDM Disease mutations124535
Blocks (Seattle)HSF5
SuperfamilyQ4G112
Human Protein AtlasENSG00000176160
Peptide AtlasQ4G112
IPIIPI00297953   IPI00983044   
Protein Interaction databases
DIP (DOE-UCLA)Q4G112
IntAct (EBI)Q4G112
FunCoupENSG00000176160
BioGRIDHSF5
STRING (EMBL)HSF5
ZODIACHSF5
Ontologies - Pathways
QuickGOQ4G112
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkHSF5
Atlas of Cancer Signalling NetworkHSF5
Wikipedia pathwaysHSF5
Orthology - Evolution
OrthoDB124535
GeneTree (enSembl)ENSG00000176160
Phylogenetic Trees/Animal Genes : TreeFamHSF5
HOVERGENQ4G112
HOGENOMQ4G112
Homologs : HomoloGeneHSF5
Homology/Alignments : Family Browser (UCSC)HSF5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSF5
dbVarHSF5
ClinVarHSF5
1000_GenomesHSF5 
Exome Variant ServerHSF5
ExAC (Exome Aggregation Consortium)HSF5 (select the gene name)
Genetic variants : HAPMAP124535
Genomic Variants (DGV)HSF5 [DGVbeta]
DECIPHERHSF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSF5 
Mutations
ICGC Data PortalHSF5 
TCGA Data PortalHSF5 
Broad Tumor PortalHSF5
OASIS PortalHSF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSF5
DgiDB (Drug Gene Interaction Database)HSF5
DoCM (Curated mutations)HSF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSF5 (select a term)
intoGenHSF5
Cancer3DHSF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSF5
Genetic Testing Registry HSF5
NextProtQ4G112 [Medical]
TSGene124535
GENETestsHSF5
Target ValidationHSF5
Huge Navigator HSF5 [HugePedia]
snp3D : Map Gene to Disease124535
BioCentury BCIQHSF5
ClinGenHSF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124535
Chemical/Pharm GKB GenePA145008204
Clinical trialHSF5
Miscellaneous
canSAR (ICR)HSF5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSF5
EVEXHSF5
GoPubMedHSF5
iHOPHSF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.