Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HSF5 (heat shock transcription factor 5)

Identity

Alias (NCBI)HSF 5
HSTF 5
HGNC (Hugo) HSF5
HGNC Alias symbFLJ40311
HGNC Previous nameheat shock transcription factor family member 5
LocusID (NCBI) 124535
Atlas_Id 64444
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58420167 and ends at 58488408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSF5 (17q22) / TRAPPC4 (11q23.3)NOL11 (17q24.2) / HSF5 (17q22)RNF43 (17q22) / HSF5 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)HSF5   26862
Cards
Entrez_Gene (NCBI)HSF5    heat shock transcription factor 5
AliasesHSF; HSTF
GeneCards (Weizmann)HSF5
Ensembl hg19 (Hinxton)ENSG00000176160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176160 [Gene_View]  ENSG00000176160 [Sequence]  chr17:58420167-58488408 [Contig_View]  HSF5 [Vega]
ICGC DataPortalENSG00000176160
TCGA cBioPortalHSF5
AceView (NCBI)HSF5
Genatlas (Paris)HSF5
SOURCE (Princeton)HSF5
Genetics Home Reference (NIH)HSF5
Genomic and cartography
GoldenPath hg38 (UCSC)HSF5  -     chr17:58420167-58488408 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSF5  -     17q22   [Description]    (hg19-Feb_2009)
GoldenPathHSF5 - 17q22 [CytoView hg19]  HSF5 - 17q22 [CytoView hg38]
ImmunoBaseENSG00000176160
Genome Data Viewer NCBIHSF5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL137385 BC033017 BC033020 BC115385 BC115386
RefSeq transcript (Entrez)NM_001080439
Consensus coding sequences : CCDS (NCBI)HSF5
Gene ExpressionHSF5 [ NCBI-GEO ]   HSF5 [ EBI - ARRAY_EXPRESS ]   HSF5 [ SEEK ]   HSF5 [ MEM ]
Gene Expression Viewer (FireBrowse)HSF5 [ Firebrowse - Broad ]
GenevisibleExpression of HSF5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124535
GTEX Portal (Tissue expression)HSF5
Human Protein AtlasENSG00000176160-HSF5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G112
PhosPhoSitePlusQ4G112
Domains : Interpro (EBI)HSF5    HSF_DNA-bd    HSF_fam    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSF5
SuperfamilyQ4G112
AlphaFold pdb e-kbQ4G112   
Human Protein Atlas [tissue]ENSG00000176160-HSF5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q4G112
IntAct (EBI)Q4G112
BioGRIDHSF5
STRING (EMBL)HSF5
ZODIACHSF5
Ontologies - Pathways
QuickGOQ4G112
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkHSF5
Atlas of Cancer Signalling NetworkHSF5
Wikipedia pathwaysHSF5
Orthology - Evolution
OrthoDB124535
GeneTree (enSembl)ENSG00000176160
Phylogenetic Trees/Animal Genes : TreeFamHSF5
Homologs : HomoloGeneHSF5
Homology/Alignments : Family Browser (UCSC)HSF5
Gene fusions - Rearrangements
Fusion : QuiverHSF5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSF5
dbVarHSF5
ClinVarHSF5
MonarchHSF5
1000_GenomesHSF5 
Exome Variant ServerHSF5
GNOMAD BrowserENSG00000176160
Varsome BrowserHSF5
ACMGHSF5 variants
VarityQ4G112
Genomic Variants (DGV)HSF5 [DGVbeta]
DECIPHERHSF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSF5 
Mutations
ICGC Data PortalHSF5 
TCGA Data PortalHSF5 
Broad Tumor PortalHSF5
OASIS PortalHSF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSF5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHSF5
Mutations and Diseases : HGMDHSF5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHSF5
DgiDB (Drug Gene Interaction Database)HSF5
DoCM (Curated mutations)HSF5
CIViC (Clinical Interpretations of Variants in Cancer)HSF5
Cancer3DHSF5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHSF5
MedgenHSF5
Genetic Testing Registry HSF5
NextProtQ4G112 [Medical]
GENETestsHSF5
Target ValidationHSF5
Huge Navigator HSF5 [HugePedia]
ClinGenHSF5
Clinical trials, drugs, therapy
MyCancerGenomeHSF5
Protein Interactions : CTDHSF5
Pharm GKB GenePA145008204
PharosQ4G112
Clinical trialHSF5
Miscellaneous
canSAR (ICR)HSF5
HarmonizomeHSF5
DataMed IndexHSF5
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHSF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:53:14 CEST 2021
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