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HSFX1 (heat shock transcription factor family, X-linked 1)

Identity

Alias_symbol (synonym)LW-1
Other alias
HGNC (Hugo) HSFX1
LocusID (NCBI) 100506164
Atlas_Id 64445
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149592523 and ends at 149595314 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSFX1   29603
Cards
Entrez_Gene (NCBI)HSFX1  100506164  heat shock transcription factor family, X-linked 1
AliasesLW-1
GeneCards (Weizmann)HSFX1
Ensembl hg19 (Hinxton)ENSG00000171116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171116 [Gene_View]  chrX:149592523-149595314 [Contig_View]  HSFX1 [Vega]
ICGC DataPortalENSG00000171116
TCGA cBioPortalHSFX1
AceView (NCBI)HSFX1
Genatlas (Paris)HSFX1
WikiGenes100506164
SOURCE (Princeton)HSFX1
Genetics Home Reference (NIH)HSFX1
Genomic and cartography
GoldenPath hg38 (UCSC)HSFX1  -     chrX:149592523-149595314 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSFX1  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblHSFX1 - Xq28 [CytoView hg19]  HSFX1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIHSFX1 [Mapview hg19]  HSFX1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF139980 AK310305 BC021706 DQ893645 EU176515
RefSeq transcript (Entrez)NM_016153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSFX1
Cluster EST : UnigeneHs.709146 [ NCBI ]
CGAP (NCI)Hs.709146
Alternative Splicing GalleryENSG00000171116
Gene ExpressionHSFX1 [ NCBI-GEO ]   HSFX1 [ EBI - ARRAY_EXPRESS ]   HSFX1 [ SEEK ]   HSFX1 [ MEM ]
Gene Expression Viewer (FireBrowse)HSFX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506164
GTEX Portal (Tissue expression)HSFX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBD0
Splice isoforms : SwissVarQ9UBD0
PhosPhoSitePlusQ9UBD0
Domains : Interpro (EBI)HSF_DNA-bd    HSF_fam    HSFX/HSFY    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSFX1
DMDM Disease mutations100506164
Blocks (Seattle)HSFX1
SuperfamilyQ9UBD0
Human Protein AtlasENSG00000171116
Peptide AtlasQ9UBD0
Protein Interaction databases
DIP (DOE-UCLA)Q9UBD0
IntAct (EBI)Q9UBD0
FunCoupENSG00000171116
BioGRIDHSFX1
STRING (EMBL)HSFX1
ZODIACHSFX1
Ontologies - Pathways
QuickGOQ9UBD0
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkHSFX1
Atlas of Cancer Signalling NetworkHSFX1
Wikipedia pathwaysHSFX1
Orthology - Evolution
OrthoDB100506164
GeneTree (enSembl)ENSG00000171116
Phylogenetic Trees/Animal Genes : TreeFamHSFX1
HOVERGENQ9UBD0
HOGENOMQ9UBD0
Homologs : HomoloGeneHSFX1
Homology/Alignments : Family Browser (UCSC)HSFX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSFX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSFX1
dbVarHSFX1
ClinVarHSFX1
1000_GenomesHSFX1 
Exome Variant ServerHSFX1
ExAC (Exome Aggregation Consortium)HSFX1 (select the gene name)
Genetic variants : HAPMAP100506164
Genomic Variants (DGV)HSFX1 [DGVbeta]
DECIPHERHSFX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSFX1 
Mutations
ICGC Data PortalHSFX1 
TCGA Data PortalHSFX1 
Broad Tumor PortalHSFX1
OASIS PortalHSFX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSFX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSFX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSFX1
DgiDB (Drug Gene Interaction Database)HSFX1
DoCM (Curated mutations)HSFX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSFX1 (select a term)
intoGenHSFX1
Cancer3DHSFX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSFX1
Genetic Testing Registry HSFX1
NextProtQ9UBD0 [Medical]
TSGene100506164
GENETestsHSFX1
Target ValidationHSFX1
Huge Navigator HSFX1 [HugePedia]
snp3D : Map Gene to Disease100506164
BioCentury BCIQHSFX1
ClinGenHSFX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506164
Chemical/Pharm GKB GenePA145008220
Clinical trialHSFX1
Miscellaneous
canSAR (ICR)HSFX1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSFX1
EVEXHSFX1
GoPubMedHSFX1
iHOPHSFX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:52:53 CEST 2017

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