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HSFX2 (heat shock transcription factor family, X-linked 2)

Identity

Other alias-
HGNC (Hugo) HSFX2
LocusID (NCBI) 100130086
Atlas_Id 64446
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149592512 and ends at 149595310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSFX2   32701
Cards
Entrez_Gene (NCBI)HSFX2  100130086  heat shock transcription factor family, X-linked 2
Aliases
GeneCards (Weizmann)HSFX2
Ensembl hg19 (Hinxton)ENSG00000268738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268738 [Gene_View]  ENSG00000268738 [Sequence]  chrX:149592512-149595310 [Contig_View]  HSFX2 [Vega]
ICGC DataPortalENSG00000268738
TCGA cBioPortalHSFX2
AceView (NCBI)HSFX2
Genatlas (Paris)HSFX2
WikiGenes100130086
SOURCE (Princeton)HSFX2
Genetics Home Reference (NIH)HSFX2
Genomic and cartography
GoldenPath hg38 (UCSC)HSFX2  -     chrX:149592512-149595310 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSFX2  -     Xq28   [Description]    (hg19-Feb_2009)
GoldenPathHSFX2 - Xq28 [CytoView hg19]  HSFX2 - Xq28 [CytoView hg38]
ImmunoBaseENSG00000268738
Mapping of homologs : NCBIHSFX2 [Mapview hg19]  HSFX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF139980 AK310305 BC021706 HM005561
RefSeq transcript (Entrez)NM_001164415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSFX2
Cluster EST : UnigeneHs.709146 [ NCBI ]
CGAP (NCI)Hs.709146
Alternative Splicing GalleryENSG00000268738
Gene ExpressionHSFX2 [ NCBI-GEO ]   HSFX2 [ EBI - ARRAY_EXPRESS ]   HSFX2 [ SEEK ]   HSFX2 [ MEM ]
Gene Expression Viewer (FireBrowse)HSFX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130086
GTEX Portal (Tissue expression)HSFX2
Human Protein AtlasENSG00000268738-HSFX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBD0
Splice isoforms : SwissVarQ9UBD0
PhosPhoSitePlusQ9UBD0
Domains : Interpro (EBI)HSF_DNA-bd    HSF_fam    HSFX    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSFX2
DMDM Disease mutations100130086
Blocks (Seattle)HSFX2
SuperfamilyQ9UBD0
Human Protein Atlas [tissue]ENSG00000268738-HSFX2 [tissue]
Peptide AtlasQ9UBD0
IPIIPI00007700   IPI00974127   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBD0
IntAct (EBI)Q9UBD0
FunCoupENSG00000268738
BioGRIDHSFX2
STRING (EMBL)HSFX2
ZODIACHSFX2
Ontologies - Pathways
QuickGOQ9UBD0
Ontology : AmiGORNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  cytoplasm  cellular response to heat  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter in response to heat stress  
Ontology : EGO-EBIRNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  cytoplasm  cellular response to heat  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter in response to heat stress  
NDEx NetworkHSFX2
Atlas of Cancer Signalling NetworkHSFX2
Wikipedia pathwaysHSFX2
Orthology - Evolution
OrthoDB100130086
GeneTree (enSembl)ENSG00000268738
Phylogenetic Trees/Animal Genes : TreeFamHSFX2
HOGENOMQ9UBD0
Homologs : HomoloGeneHSFX2
Homology/Alignments : Family Browser (UCSC)HSFX2
Gene fusions - Rearrangements
Fusion : QuiverHSFX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSFX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSFX2
dbVarHSFX2
ClinVarHSFX2
1000_GenomesHSFX2 
Exome Variant ServerHSFX2
ExAC (Exome Aggregation Consortium)ENSG00000268738
GNOMAD BrowserENSG00000268738
Varsome BrowserHSFX2
Genetic variants : HAPMAP100130086
Genomic Variants (DGV)HSFX2 [DGVbeta]
DECIPHERHSFX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSFX2 
Mutations
ICGC Data PortalHSFX2 
TCGA Data PortalHSFX2 
Broad Tumor PortalHSFX2
OASIS PortalHSFX2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSFX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSFX2
DgiDB (Drug Gene Interaction Database)HSFX2
DoCM (Curated mutations)HSFX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSFX2 (select a term)
intoGenHSFX2
Cancer3DHSFX2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHSFX2
MedgenHSFX2
Genetic Testing Registry HSFX2
NextProtQ9UBD0 [Medical]
TSGene100130086
GENETestsHSFX2
Target ValidationHSFX2
Huge Navigator HSFX2 [HugePedia]
snp3D : Map Gene to Disease100130086
BioCentury BCIQHSFX2
ClinGenHSFX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130086
Chemical/Pharm GKB GenePA145008228
Clinical trialHSFX2
Miscellaneous
canSAR (ICR)HSFX2 (select the gene name)
DataMed IndexHSFX2
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSFX2
EVEXHSFX2
GoPubMedHSFX2
iHOPHSFX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 15:31:30 CEST 2019

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