Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HSFX2 (heat shock transcription factor family, X-linked 2)

Identity

Other alias-
HGNC (Hugo) HSFX2
LocusID (NCBI) 100130086
Atlas_Id 64446
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149592512 and ends at 149595310 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSFX2   32701
Cards
Entrez_Gene (NCBI)HSFX2  100130086  heat shock transcription factor family, X-linked 2
Aliases
GeneCards (Weizmann)HSFX2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:149592512-149595310 [Contig_View]  HSFX2 [Vega]
TCGA cBioPortalHSFX2
AceView (NCBI)HSFX2
Genatlas (Paris)HSFX2
WikiGenes100130086
SOURCE (Princeton)HSFX2
Genetics Home Reference (NIH)HSFX2
Genomic and cartography
GoldenPath hg38 (UCSC)HSFX2  -     chrX:149592512-149595310 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSFX2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblHSFX2 - Xq28 [CytoView hg19]  HSFX2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIHSFX2 [Mapview hg19]  HSFX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF139980 AK310305 BC021706 HM005561
RefSeq transcript (Entrez)NM_001164415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSFX2
Cluster EST : UnigeneHs.709146 [ NCBI ]
CGAP (NCI)Hs.709146
Gene ExpressionHSFX2 [ NCBI-GEO ]   HSFX2 [ EBI - ARRAY_EXPRESS ]   HSFX2 [ SEEK ]   HSFX2 [ MEM ]
Gene Expression Viewer (FireBrowse)HSFX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130086
GTEX Portal (Tissue expression)HSFX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBD0
Splice isoforms : SwissVarQ9UBD0
PhosPhoSitePlusQ9UBD0
Domains : Interpro (EBI)HSF_DNA-bd    HSF_fam    HSFX/HSFY    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSFX2
DMDM Disease mutations100130086
Blocks (Seattle)HSFX2
SuperfamilyQ9UBD0
Peptide AtlasQ9UBD0
IPIIPI00007700   IPI00974127   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBD0
IntAct (EBI)Q9UBD0
BioGRIDHSFX2
STRING (EMBL)HSFX2
ZODIACHSFX2
Ontologies - Pathways
QuickGOQ9UBD0
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkHSFX2
Atlas of Cancer Signalling NetworkHSFX2
Wikipedia pathwaysHSFX2
Orthology - Evolution
OrthoDB100130086
Phylogenetic Trees/Animal Genes : TreeFamHSFX2
HOVERGENQ9UBD0
HOGENOMQ9UBD0
Homologs : HomoloGeneHSFX2
Homology/Alignments : Family Browser (UCSC)HSFX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSFX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSFX2
dbVarHSFX2
ClinVarHSFX2
1000_GenomesHSFX2 
Exome Variant ServerHSFX2
ExAC (Exome Aggregation Consortium)HSFX2 (select the gene name)
Genetic variants : HAPMAP100130086
Genomic Variants (DGV)HSFX2 [DGVbeta]
DECIPHERHSFX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSFX2 
Mutations
ICGC Data PortalHSFX2 
TCGA Data PortalHSFX2 
Broad Tumor PortalHSFX2
OASIS PortalHSFX2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSFX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSFX2
DgiDB (Drug Gene Interaction Database)HSFX2
DoCM (Curated mutations)HSFX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSFX2 (select a term)
intoGenHSFX2
Cancer3DHSFX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSFX2
Genetic Testing Registry HSFX2
NextProtQ9UBD0 [Medical]
TSGene100130086
GENETestsHSFX2
Target ValidationHSFX2
Huge Navigator HSFX2 [HugePedia]
snp3D : Map Gene to Disease100130086
BioCentury BCIQHSFX2
ClinGenHSFX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130086
Chemical/Pharm GKB GenePA145008228
Clinical trialHSFX2
Miscellaneous
canSAR (ICR)HSFX2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSFX2
EVEXHSFX2
GoPubMedHSFX2
iHOPHSFX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:54 CEST 2017

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