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HSFY1 (heat shock transcription factor, Y-linked 1)

Identity

Alias_namesHSFY
heat shock transcription factor, Y-linked
Alias_symbol (synonym)HSF2L
Other alias
HGNC (Hugo) HSFY1
LocusID (NCBI) 86614
Atlas_Id 64447
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 18546688 and ends at 18548592 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSFY1   18568
Cards
Entrez_Gene (NCBI)HSFY1  86614  heat shock transcription factor, Y-linked 1
AliasesHSF2L; HSFY
GeneCards (Weizmann)HSFY1
Ensembl hg19 (Hinxton)ENSG00000172468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172468 [Gene_View]  chrY:18546688-18548592 [Contig_View]  HSFY1 [Vega]
ICGC DataPortalENSG00000172468
TCGA cBioPortalHSFY1
AceView (NCBI)HSFY1
Genatlas (Paris)HSFY1
WikiGenes86614
SOURCE (Princeton)HSFY1
Genetics Home Reference (NIH)HSFY1
Genomic and cartography
GoldenPath hg38 (UCSC)HSFY1  -     chrY:18546688-18548592 +  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSFY1  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblHSFY1 - Yq11.222 [CytoView hg19]  HSFY1 - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBIHSFY1 [Mapview hg19]  HSFY1 [Mapview hg38]
OMIM400029   415000   
Gene and transcription
Genbank (Entrez)AF332226 AF332227 AJ566404 BC036567 BC055414
RefSeq transcript (Entrez)NM_001001871 NM_033108 NM_152584
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSFY1
Cluster EST : UnigeneHs.662281 [ NCBI ]
CGAP (NCI)Hs.662281
Alternative Splicing GalleryENSG00000172468
Gene ExpressionHSFY1 [ NCBI-GEO ]   HSFY1 [ EBI - ARRAY_EXPRESS ]   HSFY1 [ SEEK ]   HSFY1 [ MEM ]
Gene Expression Viewer (FireBrowse)HSFY1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)86614
GTEX Portal (Tissue expression)HSFY1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LI6
Splice isoforms : SwissVarQ96LI6
PhosPhoSitePlusQ96LI6
Domains : Interpro (EBI)HSF_DNA-bd    HSF_fam    HSFX/HSFY    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSFY1
DMDM Disease mutations86614
Blocks (Seattle)HSFY1
SuperfamilyQ96LI6
Human Protein AtlasENSG00000172468
Peptide AtlasQ96LI6
HPRD11850
Protein Interaction databases
DIP (DOE-UCLA)Q96LI6
IntAct (EBI)Q96LI6
FunCoupENSG00000172468
BioGRIDHSFY1
STRING (EMBL)HSFY1
ZODIACHSFY1
Ontologies - Pathways
QuickGOQ96LI6
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkHSFY1
Atlas of Cancer Signalling NetworkHSFY1
Wikipedia pathwaysHSFY1
Orthology - Evolution
OrthoDB86614
GeneTree (enSembl)ENSG00000172468
Phylogenetic Trees/Animal Genes : TreeFamHSFY1
HOVERGENQ96LI6
HOGENOMQ96LI6
Homologs : HomoloGeneHSFY1
Homology/Alignments : Family Browser (UCSC)HSFY1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSFY1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSFY1
dbVarHSFY1
ClinVarHSFY1
1000_GenomesHSFY1 
Exome Variant ServerHSFY1
ExAC (Exome Aggregation Consortium)HSFY1 (select the gene name)
Genetic variants : HAPMAP86614
Genomic Variants (DGV)HSFY1 [DGVbeta]
DECIPHERHSFY1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSFY1 
Mutations
ICGC Data PortalHSFY1 
TCGA Data PortalHSFY1 
Broad Tumor PortalHSFY1
OASIS PortalHSFY1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSFY1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSFY1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSFY1
DgiDB (Drug Gene Interaction Database)HSFY1
DoCM (Curated mutations)HSFY1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSFY1 (select a term)
intoGenHSFY1
Cancer3DHSFY1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400029    415000   
Orphanet
MedgenHSFY1
Genetic Testing Registry HSFY1
NextProtQ96LI6 [Medical]
TSGene86614
GENETestsHSFY1
Target ValidationHSFY1
Huge Navigator HSFY1 [HugePedia]
snp3D : Map Gene to Disease86614
BioCentury BCIQHSFY1
ClinGenHSFY1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD86614
Chemical/Pharm GKB GenePA38580
Clinical trialHSFY1
Miscellaneous
canSAR (ICR)HSFY1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSFY1
EVEXHSFY1
GoPubMedHSFY1
iHOPHSFY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:50 CEST 2017

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