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HSFY2 (heat shock transcription factor, Y-linked 2)

Identity

Alias_symbol (synonym)FLJ25453
Other aliasHSF2L
HSFY
HGNC (Hugo) HSFY2
LocusID (NCBI) 159119
Atlas_Id 64449
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 18546691 and ends at 18588963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSFY2   23950
Cards
Entrez_Gene (NCBI)HSFY2  159119  heat shock transcription factor, Y-linked 2
AliasesHSF2L; HSFY
GeneCards (Weizmann)HSFY2
Ensembl hg19 (Hinxton)ENSG00000169953 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169953 [Gene_View]  chrY:18546691-18588963 [Contig_View]  HSFY2 [Vega]
ICGC DataPortalENSG00000169953
TCGA cBioPortalHSFY2
AceView (NCBI)HSFY2
Genatlas (Paris)HSFY2
WikiGenes159119
SOURCE (Princeton)HSFY2
Genetics Home Reference (NIH)HSFY2
Genomic and cartography
GoldenPath hg38 (UCSC)HSFY2  -     chrY:18546691-18588963 +  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSFY2  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblHSFY2 - Yq11.222 [CytoView hg19]  HSFY2 - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBIHSFY2 [Mapview hg19]  HSFY2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058182 BC062752 BC148445 BC153035 HQ258416
RefSeq transcript (Entrez)NM_001001877 NM_153716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSFY2
Cluster EST : UnigeneHs.592255 [ NCBI ]
CGAP (NCI)Hs.592255
Alternative Splicing GalleryENSG00000169953
Gene ExpressionHSFY2 [ NCBI-GEO ]   HSFY2 [ EBI - ARRAY_EXPRESS ]   HSFY2 [ SEEK ]   HSFY2 [ MEM ]
Gene Expression Viewer (FireBrowse)HSFY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159119
GTEX Portal (Tissue expression)HSFY2
Human Protein AtlasENSG00000169953-HSFY2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LI6
Splice isoforms : SwissVarQ96LI6
PhosPhoSitePlusQ96LI6
Domains : Interpro (EBI)HSF_DNA-bd    HSF_fam    HSFX/HSFY    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)HSF_DNA-bind (PF00447)   
Domain families : Pfam (NCBI)pfam00447   
Domain families : Smart (EMBL)HSF (SM00415)  
Conserved Domain (NCBI)HSFY2
DMDM Disease mutations159119
Blocks (Seattle)HSFY2
SuperfamilyQ96LI6
Human Protein Atlas [tissue]ENSG00000169953-HSFY2 [tissue]
Peptide AtlasQ96LI6
HPRD13680
IPIIPI00307273   IPI00027534   IPI00385119   
Protein Interaction databases
DIP (DOE-UCLA)Q96LI6
IntAct (EBI)Q96LI6
FunCoupENSG00000169953
BioGRIDHSFY2
STRING (EMBL)HSFY2
ZODIACHSFY2
Ontologies - Pathways
QuickGOQ96LI6
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkHSFY2
Atlas of Cancer Signalling NetworkHSFY2
Wikipedia pathwaysHSFY2
Orthology - Evolution
OrthoDB159119
GeneTree (enSembl)ENSG00000169953
Phylogenetic Trees/Animal Genes : TreeFamHSFY2
HOVERGENQ96LI6
HOGENOMQ96LI6
Homologs : HomoloGeneHSFY2
Homology/Alignments : Family Browser (UCSC)HSFY2
Gene fusions - Rearrangements
Tumor Fusion PortalHSFY2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSFY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSFY2
dbVarHSFY2
ClinVarHSFY2
1000_GenomesHSFY2 
Exome Variant ServerHSFY2
ExAC (Exome Aggregation Consortium)ENSG00000169953
GNOMAD BrowserENSG00000169953
Genetic variants : HAPMAP159119
Genomic Variants (DGV)HSFY2 [DGVbeta]
DECIPHERHSFY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSFY2 
Mutations
ICGC Data PortalHSFY2 
TCGA Data PortalHSFY2 
Broad Tumor PortalHSFY2
OASIS PortalHSFY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSFY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSFY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSFY2
DgiDB (Drug Gene Interaction Database)HSFY2
DoCM (Curated mutations)HSFY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSFY2 (select a term)
intoGenHSFY2
Cancer3DHSFY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHSFY2
MedgenHSFY2
Genetic Testing Registry HSFY2
NextProtQ96LI6 [Medical]
TSGene159119
GENETestsHSFY2
Target ValidationHSFY2
Huge Navigator HSFY2 [HugePedia]
snp3D : Map Gene to Disease159119
BioCentury BCIQHSFY2
ClinGenHSFY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159119
Chemical/Pharm GKB GenePA134894795
Clinical trialHSFY2
Miscellaneous
canSAR (ICR)HSFY2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSFY2
EVEXHSFY2
GoPubMedHSFY2
iHOPHSFY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:01:07 CET 2017

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