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HSP90AA4P (heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene)

Identity

Alias_namesHSPCAL2
heat shock 90kD protein 1, alpha-like 2
heat shock 90kDa protein 1, alpha-like 2
heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene
Other aliasHSP90Ad
HGNC (Hugo) HSP90AA4P
LocusID (NCBI) 3323
Atlas_Id 64451
Location 4q35.2  [Link to chromosome band 4q35]
Location_base_pair Starts at 190394301 and ends at 190396344 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HSP90AA4P   5255
Cards
Entrez_Gene (NCBI)HSP90AA4P  3323  heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene
AliasesHSP90Ad; HSPCAL2
GeneCards (Weizmann)HSP90AA4P
Ensembl hg19 (Hinxton) [Gene_View]  chr4:190394301-190396344 [Contig_View]  HSP90AA4P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:190394301-190396344 [Contig_View]  HSP90AA4P [Vega]
TCGA cBioPortalHSP90AA4P
AceView (NCBI)HSP90AA4P
Genatlas (Paris)HSP90AA4P
WikiGenes3323
SOURCE (Princeton)HSP90AA4P
Genetics Home Reference (NIH)HSP90AA4P
Genomic and cartography
GoldenPath hg19 (UCSC)HSP90AA4P  -     chr4:190394301-190396344 +  4q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSP90AA4P  -     4q35.2   [Description]    (hg38-Dec_2013)
EnsemblHSP90AA4P - 4q35.2 [CytoView hg19]  HSP90AA4P - 4q35.2 [CytoView hg38]
Mapping of homologs : NCBIHSP90AA4P [Mapview hg19]  HSP90AA4P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY956760
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_003014 NT_016354 NT_187679 NW_004929320
Consensus coding sequences : CCDS (NCBI)HSP90AA4P
Cluster EST : UnigeneHs.553481 [ NCBI ]
CGAP (NCI)Hs.553481
Gene ExpressionHSP90AA4P [ NCBI-GEO ]   HSP90AA4P [ EBI - ARRAY_EXPRESS ]   HSP90AA4P [ SEEK ]   HSP90AA4P [ MEM ]
Gene Expression Viewer (FireBrowse)HSP90AA4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3323
GTEX Portal (Tissue expression)HSP90AA4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58FG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58FG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58FG1
Splice isoforms : SwissVarQ58FG1
PhosPhoSitePlusQ58FG1
Domains : Interpro (EBI)HATPase_C    Hsp90_fam    Hsp90_N    Ribosomal_S5_D2-typ_fold   
Domain families : Pfam (Sanger)HSP90 (PF00183)   
Domain families : Pfam (NCBI)pfam00183   
Domain families : Smart (EMBL)HATPase_c (SM00387)  
Conserved Domain (NCBI)HSP90AA4P
DMDM Disease mutations3323
Blocks (Seattle)HSP90AA4P
SuperfamilyQ58FG1
Peptide AtlasQ58FG1
IPIIPI00555957   
Protein Interaction databases
DIP (DOE-UCLA)Q58FG1
IntAct (EBI)Q58FG1
BioGRIDHSP90AA4P
STRING (EMBL)HSP90AA4P
ZODIACHSP90AA4P
Ontologies - Pathways
QuickGOQ58FG1
Ontology : AmiGOmolecular_function  ATP binding  cellular_component  cytoplasm  protein folding  response to stress  biological_process  unfolded protein binding  
Ontology : EGO-EBImolecular_function  ATP binding  cellular_component  cytoplasm  protein folding  response to stress  biological_process  unfolded protein binding  
NDEx NetworkHSP90AA4P
Atlas of Cancer Signalling NetworkHSP90AA4P
Wikipedia pathwaysHSP90AA4P
Orthology - Evolution
OrthoDB3323
Phylogenetic Trees/Animal Genes : TreeFamHSP90AA4P
HOVERGENQ58FG1
HOGENOMQ58FG1
Homologs : HomoloGeneHSP90AA4P
Homology/Alignments : Family Browser (UCSC)HSP90AA4P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSP90AA4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSP90AA4P
dbVarHSP90AA4P
ClinVarHSP90AA4P
1000_GenomesHSP90AA4P 
Exome Variant ServerHSP90AA4P
ExAC (Exome Aggregation Consortium)HSP90AA4P (select the gene name)
Genetic variants : HAPMAP3323
Genomic Variants (DGV)HSP90AA4P [DGVbeta]
DECIPHER (Syndromes)4:190394301-190396344  
CONAN: Copy Number AnalysisHSP90AA4P 
Mutations
ICGC Data PortalHSP90AA4P 
TCGA Data PortalHSP90AA4P 
Broad Tumor PortalHSP90AA4P
OASIS PortalHSP90AA4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSP90AA4P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSP90AA4P
DgiDB (Drug Gene Interaction Database)HSP90AA4P
DoCM (Curated mutations)HSP90AA4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSP90AA4P (select a term)
intoGenHSP90AA4P
Cancer3DHSP90AA4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSP90AA4P
Genetic Testing Registry HSP90AA4P
NextProtQ58FG1 [Medical]
TSGene3323
GENETestsHSP90AA4P
Huge Navigator HSP90AA4P [HugePedia]
snp3D : Map Gene to Disease3323
BioCentury BCIQHSP90AA4P
ClinGenHSP90AA4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3323
Chemical/Pharm GKB GenePA29521
Clinical trialHSP90AA4P
Miscellaneous
canSAR (ICR)HSP90AA4P (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSP90AA4P
EVEXHSP90AA4P
GoPubMedHSP90AA4P
iHOPHSP90AA4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:18 CET 2017

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