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HSP90AB3P (heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene)

Identity

Alias_namesHSPCP1
heat shock 90kD protein 1, beta pseudogene 1
heat shock 90kDa protein 1, beta pseudogene 1
heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene
Other aliasHSP90BC
HGNC (Hugo) HSP90AB3P
LocusID (NCBI) 3327
Atlas_Id 64454
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 88812995 and ends at 88815167 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HSP90AB3P   5259
Cards
Entrez_Gene (NCBI)HSP90AB3P  3327  heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene
AliasesHSP90BC; HSPCP1
GeneCards (Weizmann)HSP90AB3P
Ensembl hg19 (Hinxton) [Gene_View]  chr4:88812995-88815167 [Contig_View]  HSP90AB3P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:88812995-88815167 [Contig_View]  HSP90AB3P [Vega]
TCGA cBioPortalHSP90AB3P
AceView (NCBI)HSP90AB3P
Genatlas (Paris)HSP90AB3P
WikiGenes3327
SOURCE (Princeton)HSP90AB3P
Genetics Home Reference (NIH)HSP90AB3P
Genomic and cartography
GoldenPath hg19 (UCSC)HSP90AB3P  -     chr4:88812995-88815167 +  4q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSP90AB3P  -     4q22.1   [Description]    (hg38-Dec_2013)
EnsemblHSP90AB3P - 4q22.1 [CytoView hg19]  HSP90AB3P - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIHSP90AB3P [Mapview hg19]  HSP90AB3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY956764
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_003015 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)HSP90AB3P
Cluster EST : UnigeneHs.744112 [ NCBI ]
CGAP (NCI)Hs.744112
Gene ExpressionHSP90AB3P [ NCBI-GEO ]   HSP90AB3P [ EBI - ARRAY_EXPRESS ]   HSP90AB3P [ SEEK ]   HSP90AB3P [ MEM ]
Gene Expression Viewer (FireBrowse)HSP90AB3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3327
GTEX Portal (Tissue expression)HSP90AB3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58FF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58FF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58FF7
Splice isoforms : SwissVarQ58FF7
PhosPhoSitePlusQ58FF7
Domains : Interpro (EBI)HATPase_C    Hsp90_fam    Hsp90_N    Ribosomal_S5_D2-typ_fold   
Domain families : Pfam (Sanger)HSP90 (PF00183)   
Domain families : Pfam (NCBI)pfam00183   
Domain families : Smart (EMBL)HATPase_c (SM00387)  
Conserved Domain (NCBI)HSP90AB3P
DMDM Disease mutations3327
Blocks (Seattle)HSP90AB3P
SuperfamilyQ58FF7
Peptide AtlasQ58FF7
IPIIPI00555614   
Protein Interaction databases
DIP (DOE-UCLA)Q58FF7
IntAct (EBI)Q58FF7
BioGRIDHSP90AB3P
STRING (EMBL)HSP90AB3P
ZODIACHSP90AB3P
Ontologies - Pathways
QuickGOQ58FF7
Ontology : AmiGOmolecular_function  ATP binding  cytoplasm  protein folding  response to stress  biological_process  unfolded protein binding  extracellular exosome  
Ontology : EGO-EBImolecular_function  ATP binding  cytoplasm  protein folding  response to stress  biological_process  unfolded protein binding  extracellular exosome  
NDEx NetworkHSP90AB3P
Atlas of Cancer Signalling NetworkHSP90AB3P
Wikipedia pathwaysHSP90AB3P
Orthology - Evolution
OrthoDB3327
Phylogenetic Trees/Animal Genes : TreeFamHSP90AB3P
HOVERGENQ58FF7
HOGENOMQ58FF7
Homologs : HomoloGeneHSP90AB3P
Homology/Alignments : Family Browser (UCSC)HSP90AB3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSP90AB3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSP90AB3P
dbVarHSP90AB3P
ClinVarHSP90AB3P
1000_GenomesHSP90AB3P 
Exome Variant ServerHSP90AB3P
ExAC (Exome Aggregation Consortium)HSP90AB3P (select the gene name)
Genetic variants : HAPMAP3327
Genomic Variants (DGV)HSP90AB3P [DGVbeta]
DECIPHER (Syndromes)4:88812995-88815167  
CONAN: Copy Number AnalysisHSP90AB3P 
Mutations
ICGC Data PortalHSP90AB3P 
TCGA Data PortalHSP90AB3P 
Broad Tumor PortalHSP90AB3P
OASIS PortalHSP90AB3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSP90AB3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSP90AB3P
DgiDB (Drug Gene Interaction Database)HSP90AB3P
DoCM (Curated mutations)HSP90AB3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSP90AB3P (select a term)
intoGenHSP90AB3P
Cancer3DHSP90AB3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSP90AB3P
Genetic Testing Registry HSP90AB3P
NextProtQ58FF7 [Medical]
TSGene3327
GENETestsHSP90AB3P
Huge Navigator HSP90AB3P [HugePedia]
snp3D : Map Gene to Disease3327
BioCentury BCIQHSP90AB3P
ClinGenHSP90AB3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3327
Chemical/Pharm GKB GenePA29525
Clinical trialHSP90AB3P
Miscellaneous
canSAR (ICR)HSP90AB3P (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSP90AB3P
EVEXHSP90AB3P
GoPubMedHSP90AB3P
iHOPHSP90AB3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:19 CET 2017

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