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HSP90AB4P (heat shock protein 90 alpha family class B member 4, pseudogene)

Identity

Alias_namesheat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene
Other aliasHSP90Bd
HGNC (Hugo) HSP90AB4P
LocusID (NCBI) 664618
Atlas_Id 64455
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 58690473 and ends at 58693607 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSP90AB4P   32538
Cards
Entrez_Gene (NCBI)HSP90AB4P  664618  heat shock protein 90 alpha family class B member 4, pseudogene
AliasesHSP90Bd
GeneCards (Weizmann)HSP90AB4P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:58690473-58693607 [Contig_View]  HSP90AB4P [Vega]
TCGA cBioPortalHSP90AB4P
AceView (NCBI)HSP90AB4P
Genatlas (Paris)HSP90AB4P
WikiGenes664618
SOURCE (Princeton)HSP90AB4P
Genetics Home Reference (NIH)HSP90AB4P
Genomic and cartography
GoldenPath hg38 (UCSC)HSP90AB4P  -     chr15:58690473-58693607 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSP90AB4P  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblHSP90AB4P - 15q21.3 [CytoView hg19]  HSP90AB4P - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIHSP90AB4P [Mapview hg19]  HSP90AB4P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY956765 CV393081 DB113910 DB449567
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSP90AB4P
Cluster EST : UnigeneHs.670224 [ NCBI ]
CGAP (NCI)Hs.670224
Gene ExpressionHSP90AB4P [ NCBI-GEO ]   HSP90AB4P [ EBI - ARRAY_EXPRESS ]   HSP90AB4P [ SEEK ]   HSP90AB4P [ MEM ]
Gene Expression Viewer (FireBrowse)HSP90AB4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)664618
GTEX Portal (Tissue expression)HSP90AB4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58FF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58FF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58FF6
Splice isoforms : SwissVarQ58FF6
PhosPhoSitePlusQ58FF6
Domains : Interpro (EBI)HATPase_C    Hsp90_fam    Hsp90_N    Ribosomal_S5_D2-typ_fold   
Domain families : Pfam (Sanger)HATPase_c (PF02518)    HSP90 (PF00183)   
Domain families : Pfam (NCBI)pfam02518    pfam00183   
Domain families : Smart (EMBL)HATPase_c (SM00387)  
Conserved Domain (NCBI)HSP90AB4P
DMDM Disease mutations664618
Blocks (Seattle)HSP90AB4P
SuperfamilyQ58FF6
Peptide AtlasQ58FF6
IPIIPI00555565   
Protein Interaction databases
DIP (DOE-UCLA)Q58FF6
IntAct (EBI)Q58FF6
BioGRIDHSP90AB4P
STRING (EMBL)HSP90AB4P
ZODIACHSP90AB4P
Ontologies - Pathways
QuickGOQ58FF6
Ontology : AmiGOATP binding  cytoplasm  protein folding  response to stress  unfolded protein binding  
Ontology : EGO-EBIATP binding  cytoplasm  protein folding  response to stress  unfolded protein binding  
NDEx NetworkHSP90AB4P
Atlas of Cancer Signalling NetworkHSP90AB4P
Wikipedia pathwaysHSP90AB4P
Orthology - Evolution
OrthoDB664618
Phylogenetic Trees/Animal Genes : TreeFamHSP90AB4P
HOVERGENQ58FF6
HOGENOMQ58FF6
Homologs : HomoloGeneHSP90AB4P
Homology/Alignments : Family Browser (UCSC)HSP90AB4P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSP90AB4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSP90AB4P
dbVarHSP90AB4P
ClinVarHSP90AB4P
1000_GenomesHSP90AB4P 
Exome Variant ServerHSP90AB4P
ExAC (Exome Aggregation Consortium)HSP90AB4P (select the gene name)
Genetic variants : HAPMAP664618
Genomic Variants (DGV)HSP90AB4P [DGVbeta]
DECIPHERHSP90AB4P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSP90AB4P 
Mutations
ICGC Data PortalHSP90AB4P 
TCGA Data PortalHSP90AB4P 
Broad Tumor PortalHSP90AB4P
OASIS PortalHSP90AB4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSP90AB4P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSP90AB4P
DgiDB (Drug Gene Interaction Database)HSP90AB4P
DoCM (Curated mutations)HSP90AB4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSP90AB4P (select a term)
intoGenHSP90AB4P
Cancer3DHSP90AB4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSP90AB4P
Genetic Testing Registry HSP90AB4P
NextProtQ58FF6 [Medical]
TSGene664618
GENETestsHSP90AB4P
Target ValidationHSP90AB4P
Huge Navigator HSP90AB4P [HugePedia]
snp3D : Map Gene to Disease664618
BioCentury BCIQHSP90AB4P
ClinGenHSP90AB4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD664618
Chemical/Pharm GKB GenePA143485496
Clinical trialHSP90AB4P
Miscellaneous
canSAR (ICR)HSP90AB4P (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSP90AB4P
EVEXHSP90AB4P
GoPubMedHSP90AB4P
iHOPHSP90AB4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:56 CEST 2017

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