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HSP90B2P (heat shock protein 90 beta family member 2, pseudogene)

Identity

Alias_namesTRAP1
TRA1P1
HSPCP2
tumor rejection antigen (gp96) pseudogene 1
tumor rejection antigen (gp96) 1 pseudogene 1
heat shock protein 90kDa beta (Grp94), member 2, pseudogene
Alias_symbol (synonym)GRP94P1
GRP94b
Other aliasHSP
HGNC (Hugo) HSP90B2P
LocusID (NCBI) 7190
Atlas_Id 42953
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 99257525 and ends at 99260276 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSP90B2P   12099
Cards
Entrez_Gene (NCBI)HSP90B2P  7190  heat shock protein 90 beta family member 2, pseudogene
AliasesGRP94P1; GRP94b; HSP; HSPCP2; 
TRA1P1; TRAP1
GeneCards (Weizmann)HSP90B2P
Ensembl hg19 (Hinxton)ENSG00000259706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259706 [Gene_View]  chr15:99257525-99260276 [Contig_View]  HSP90B2P [Vega]
ICGC DataPortalENSG00000259706
TCGA cBioPortalHSP90B2P
AceView (NCBI)HSP90B2P
Genatlas (Paris)HSP90B2P
WikiGenes7190
SOURCE (Princeton)HSP90B2P
Genetics Home Reference (NIH)HSP90B2P
Genomic and cartography
GoldenPath hg38 (UCSC)HSP90B2P  -     chr15:99257525-99260276 +  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSP90B2P  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblHSP90B2P - 15q26.3 [CytoView hg19]  HSP90B2P - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBIHSP90B2P [Mapview hg19]  HSP90B2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY956768 R13549
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSP90B2P
Cluster EST : UnigeneHs.656611 [ NCBI ]
CGAP (NCI)Hs.656611
Alternative Splicing GalleryENSG00000259706
Gene ExpressionHSP90B2P [ NCBI-GEO ]   HSP90B2P [ EBI - ARRAY_EXPRESS ]   HSP90B2P [ SEEK ]   HSP90B2P [ MEM ]
Gene Expression Viewer (FireBrowse)HSP90B2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7190
GTEX Portal (Tissue expression)HSP90B2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58FF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58FF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58FF3
Splice isoforms : SwissVarQ58FF3
PhosPhoSitePlusQ58FF3
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Hsp90_fam    Ribosomal_S5_D2-typ_fold   
Domain families : Pfam (Sanger)HSP90 (PF00183)   
Domain families : Pfam (NCBI)pfam00183   
Conserved Domain (NCBI)HSP90B2P
DMDM Disease mutations7190
Blocks (Seattle)HSP90B2P
SuperfamilyQ58FF3
Human Protein AtlasENSG00000259706
Peptide AtlasQ58FF3
IPIIPI00556538   
Protein Interaction databases
DIP (DOE-UCLA)Q58FF3
IntAct (EBI)Q58FF3
FunCoupENSG00000259706
BioGRIDHSP90B2P
STRING (EMBL)HSP90B2P
ZODIACHSP90B2P
Ontologies - Pathways
QuickGOQ58FF3
Ontology : AmiGOATP binding  protein folding  response to stress  unfolded protein binding  
Ontology : EGO-EBIATP binding  protein folding  response to stress  unfolded protein binding  
NDEx NetworkHSP90B2P
Atlas of Cancer Signalling NetworkHSP90B2P
Wikipedia pathwaysHSP90B2P
Orthology - Evolution
OrthoDB7190
GeneTree (enSembl)ENSG00000259706
Phylogenetic Trees/Animal Genes : TreeFamHSP90B2P
HOVERGENQ58FF3
HOGENOMQ58FF3
Homologs : HomoloGeneHSP90B2P
Homology/Alignments : Family Browser (UCSC)HSP90B2P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSP90B2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSP90B2P
dbVarHSP90B2P
ClinVarHSP90B2P
1000_GenomesHSP90B2P 
Exome Variant ServerHSP90B2P
ExAC (Exome Aggregation Consortium)HSP90B2P (select the gene name)
Genetic variants : HAPMAP7190
Genomic Variants (DGV)HSP90B2P [DGVbeta]
DECIPHERHSP90B2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSP90B2P 
Mutations
ICGC Data PortalHSP90B2P 
TCGA Data PortalHSP90B2P 
Broad Tumor PortalHSP90B2P
OASIS PortalHSP90B2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSP90B2P
BioMutasearch HSP90B2P
DgiDB (Drug Gene Interaction Database)HSP90B2P
DoCM (Curated mutations)HSP90B2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSP90B2P (select a term)
intoGenHSP90B2P
Cancer3DHSP90B2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSP90B2P
Genetic Testing Registry HSP90B2P
NextProtQ58FF3 [Medical]
TSGene7190
GENETestsHSP90B2P
Target ValidationHSP90B2P
Huge Navigator HSP90B2P [HugePedia]
snp3D : Map Gene to Disease7190
BioCentury BCIQHSP90B2P
ClinGenHSP90B2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7190
Chemical/Pharm GKB GenePA134913415
Clinical trialHSP90B2P
Miscellaneous
canSAR (ICR)HSP90B2P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSP90B2P
EVEXHSP90B2P
GoPubMedHSP90B2P
iHOPHSP90B2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:37:38 CEST 2017

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