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HSPA12A (heat shock protein family A (Hsp70) member 12A)

Identity

Alias_namesheat shock 70kD protein 12A
heat shock 70kDa protein 12A
Alias_symbol (synonym)FLJ13874
KIAA0417
Other alias-
HGNC (Hugo) HSPA12A
LocusID (NCBI) 259217
Atlas_Id 47353
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116671192 and ends at 116849777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPA12A (10q25.3) / HSPA12A (10q25.3)HSPA12A (10q25.3) / SHTN1 (10q25.3)HSPA12A 10q25.3 KIAA1598

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPA12A   19022
Cards
Entrez_Gene (NCBI)HSPA12A  259217  heat shock protein family A (Hsp70) member 12A
Aliases
GeneCards (Weizmann)HSPA12A
Ensembl hg19 (Hinxton)ENSG00000165868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165868 [Gene_View]  chr10:116671192-116849777 [Contig_View]  HSPA12A [Vega]
ICGC DataPortalENSG00000165868
TCGA cBioPortalHSPA12A
AceView (NCBI)HSPA12A
Genatlas (Paris)HSPA12A
WikiGenes259217
SOURCE (Princeton)HSPA12A
Genetics Home Reference (NIH)HSPA12A
Genomic and cartography
GoldenPath hg38 (UCSC)HSPA12A  -     chr10:116671192-116849777 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSPA12A  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblHSPA12A - 10q25.3 [CytoView hg19]  HSPA12A - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIHSPA12A [Mapview hg19]  HSPA12A [Mapview hg38]
OMIM610701   
Gene and transcription
Genbank (Entrez)AB007877 AK023936 AK294672 AK294884 AL120441
RefSeq transcript (Entrez)NM_001330164 NM_025015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSPA12A
Cluster EST : UnigeneHs.648448 [ NCBI ]
CGAP (NCI)Hs.648448
Alternative Splicing GalleryENSG00000165868
Gene ExpressionHSPA12A [ NCBI-GEO ]   HSPA12A [ EBI - ARRAY_EXPRESS ]   HSPA12A [ SEEK ]   HSPA12A [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA12A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259217
GTEX Portal (Tissue expression)HSPA12A
Human Protein AtlasENSG00000165868-HSPA12A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43301   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43301  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43301
Splice isoforms : SwissVarO43301
PhosPhoSitePlusO43301
Domains : Interpro (EBI)HSPA12A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HSPA12A
DMDM Disease mutations259217
Blocks (Seattle)HSPA12A
SuperfamilyO43301
Human Protein Atlas [tissue]ENSG00000165868-HSPA12A [tissue]
Peptide AtlasO43301
IPIIPI00011932   
Protein Interaction databases
DIP (DOE-UCLA)O43301
IntAct (EBI)O43301
FunCoupENSG00000165868
BioGRIDHSPA12A
STRING (EMBL)HSPA12A
ZODIACHSPA12A
Ontologies - Pathways
QuickGOO43301
Ontology : AmiGOmolecular_function  ATP binding  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  ATP binding  biological_process  extracellular exosome  
NDEx NetworkHSPA12A
Atlas of Cancer Signalling NetworkHSPA12A
Wikipedia pathwaysHSPA12A
Orthology - Evolution
OrthoDB259217
GeneTree (enSembl)ENSG00000165868
Phylogenetic Trees/Animal Genes : TreeFamHSPA12A
HOVERGENO43301
HOGENOMO43301
Homologs : HomoloGeneHSPA12A
Homology/Alignments : Family Browser (UCSC)HSPA12A
Gene fusions - Rearrangements
Fusion : MitelmanHSPA12A/SHTN1 [10q25.3/10q25.3]  
Fusion: TCGAHSPA12A 10q25.3 KIAA1598 LUAD
Fusion: Tumor Portal HSPA12A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA12A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA12A
dbVarHSPA12A
ClinVarHSPA12A
1000_GenomesHSPA12A 
Exome Variant ServerHSPA12A
ExAC (Exome Aggregation Consortium)ENSG00000165868
GNOMAD BrowserENSG00000165868
Genetic variants : HAPMAP259217
Genomic Variants (DGV)HSPA12A [DGVbeta]
DECIPHERHSPA12A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSPA12A 
Mutations
ICGC Data PortalHSPA12A 
TCGA Data PortalHSPA12A 
Broad Tumor PortalHSPA12A
OASIS PortalHSPA12A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPA12A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSPA12A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPA12A
DgiDB (Drug Gene Interaction Database)HSPA12A
DoCM (Curated mutations)HSPA12A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPA12A (select a term)
intoGenHSPA12A
Cancer3DHSPA12A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610701   
Orphanet
MedgenHSPA12A
Genetic Testing Registry HSPA12A
NextProtO43301 [Medical]
TSGene259217
GENETestsHSPA12A
Target ValidationHSPA12A
Huge Navigator HSPA12A [HugePedia]
snp3D : Map Gene to Disease259217
BioCentury BCIQHSPA12A
ClinGenHSPA12A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259217
Chemical/Pharm GKB GenePA38779
Clinical trialHSPA12A
Miscellaneous
canSAR (ICR)HSPA12A (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPA12A
EVEXHSPA12A
GoPubMedHSPA12A
iHOPHSPA12A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:53:36 CET 2017

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