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HSPA12B (heat shock protein family A (Hsp70) member 12B)

Identity

Alias_namesC20orf60
chromosome 20 open reading frame 60
heat shock 70kD protein 12B
Alias_symbol (synonym)dJ1009E24.2
Other alias
HGNC (Hugo) HSPA12B
LocusID (NCBI) 116835
Atlas_Id 46775
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3713317 and ends at 3733758 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HSPA12B (20p13) / NETO2 (16q12.1)MYLK3 (16q11.2) / HSPA12B (20p13)YPEL2 (17q22) / HSPA12B (20p13)
YPEL2 17q22 / HSPA12B 20p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPA12B   16193
Cards
Entrez_Gene (NCBI)HSPA12B  116835  heat shock protein family A (Hsp70) member 12B
AliasesC20orf60
GeneCards (Weizmann)HSPA12B
Ensembl hg19 (Hinxton)ENSG00000132622 [Gene_View]  chr20:3713317-3733758 [Contig_View]  HSPA12B [Vega]
Ensembl hg38 (Hinxton)ENSG00000132622 [Gene_View]  chr20:3713317-3733758 [Contig_View]  HSPA12B [Vega]
ICGC DataPortalENSG00000132622
TCGA cBioPortalHSPA12B
AceView (NCBI)HSPA12B
Genatlas (Paris)HSPA12B
WikiGenes116835
SOURCE (Princeton)HSPA12B
Genetics Home Reference (NIH)HSPA12B
Genomic and cartography
GoldenPath hg19 (UCSC)HSPA12B  -     chr20:3713317-3733758 +  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSPA12B  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblHSPA12B - 20p13 [CytoView hg19]  HSPA12B - 20p13 [CytoView hg38]
Mapping of homologs : NCBIHSPA12B [Mapview hg19]  HSPA12B [Mapview hg38]
OMIM610702   
Gene and transcription
Genbank (Entrez)AK056712 AK297120 AK301294 BC090857 BC110881
RefSeq transcript (Entrez)NM_001197327 NM_001318322 NM_052970
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)HSPA12B
Cluster EST : UnigeneHs.516854 [ NCBI ]
CGAP (NCI)Hs.516854
Alternative Splicing GalleryENSG00000132622
Gene ExpressionHSPA12B [ NCBI-GEO ]   HSPA12B [ EBI - ARRAY_EXPRESS ]   HSPA12B [ SEEK ]   HSPA12B [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA12B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116835
GTEX Portal (Tissue expression)HSPA12B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MM6
Splice isoforms : SwissVarQ96MM6
PhosPhoSitePlusQ96MM6
Domains : Interpro (EBI)HSPA12B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HSPA12B
DMDM Disease mutations116835
Blocks (Seattle)HSPA12B
SuperfamilyQ96MM6
Human Protein AtlasENSG00000132622
Peptide AtlasQ96MM6
HPRD13683
IPIIPI00307820   IPI00744139   IPI00982250   IPI00647676   
Protein Interaction databases
DIP (DOE-UCLA)Q96MM6
IntAct (EBI)Q96MM6
FunCoupENSG00000132622
BioGRIDHSPA12B
STRING (EMBL)HSPA12B
ZODIACHSPA12B
Ontologies - Pathways
QuickGOQ96MM6
Ontology : AmiGOprotein binding  ATP binding  
Ontology : EGO-EBIprotein binding  ATP binding  
NDEx NetworkHSPA12B
Atlas of Cancer Signalling NetworkHSPA12B
Wikipedia pathwaysHSPA12B
Orthology - Evolution
OrthoDB116835
GeneTree (enSembl)ENSG00000132622
Phylogenetic Trees/Animal Genes : TreeFamHSPA12B
HOVERGENQ96MM6
HOGENOMQ96MM6
Homologs : HomoloGeneHSPA12B
Homology/Alignments : Family Browser (UCSC)HSPA12B
Gene fusions - Rearrangements
Fusion: TCGAYPEL2 17q22 HSPA12B 20p13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA12B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA12B
dbVarHSPA12B
ClinVarHSPA12B
1000_GenomesHSPA12B 
Exome Variant ServerHSPA12B
ExAC (Exome Aggregation Consortium)HSPA12B (select the gene name)
Genetic variants : HAPMAP116835
Genomic Variants (DGV)HSPA12B [DGVbeta]
DECIPHER (Syndromes)20:3713317-3733758  ENSG00000132622
CONAN: Copy Number AnalysisHSPA12B 
Mutations
ICGC Data PortalHSPA12B 
TCGA Data PortalHSPA12B 
Broad Tumor PortalHSPA12B
OASIS PortalHSPA12B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPA12B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSPA12B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPA12B
DgiDB (Drug Gene Interaction Database)HSPA12B
DoCM (Curated mutations)HSPA12B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPA12B (select a term)
intoGenHSPA12B
Cancer3DHSPA12B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610702   
Orphanet
MedgenHSPA12B
Genetic Testing Registry HSPA12B
NextProtQ96MM6 [Medical]
TSGene116835
GENETestsHSPA12B
Huge Navigator HSPA12B [HugePedia]
snp3D : Map Gene to Disease116835
BioCentury BCIQHSPA12B
ClinGenHSPA12B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116835
Chemical/Pharm GKB GenePA25771
Clinical trialHSPA12B
Miscellaneous
canSAR (ICR)HSPA12B (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPA12B
EVEXHSPA12B
GoPubMedHSPA12B
iHOPHSPA12B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:27 CEST 2017

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