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HSPA13 (heat shock protein family A (Hsp70) member 13)

Identity

Alias_namesSTCH
stress 70 protein chaperone, microsome-associated, 60kD
stress 70 protein chaperone, microsome-associated, 60kDa
heat shock protein 70kDa family, member 13
Other alias
HGNC (Hugo) HSPA13
LocusID (NCBI) 6782
Atlas_Id 46586
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 14371116 and ends at 14383188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSPA13 (21q11.2) / CCDC88C (14q32.11)HSPA13 (21q11.2) / HSPBP1 (19q13.42)RSF1 (11q14.1) / HSPA13 (21q11.2)
SLC25A1 (22q11.21) / HSPA13 (21q11.2)TIA1 (2p13.3) / HSPA13 (21q11.2)RSF1 11q14.1 / HSPA13 21q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPA13   11375
Cards
Entrez_Gene (NCBI)HSPA13  6782  heat shock protein family A (Hsp70) member 13
AliasesSTCH
GeneCards (Weizmann)HSPA13
Ensembl hg19 (Hinxton)ENSG00000155304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155304 [Gene_View]  chr21:14371116-14383188 [Contig_View]  HSPA13 [Vega]
ICGC DataPortalENSG00000155304
TCGA cBioPortalHSPA13
AceView (NCBI)HSPA13
Genatlas (Paris)HSPA13
WikiGenes6782
SOURCE (Princeton)HSPA13
Genetics Home Reference (NIH)HSPA13
Genomic and cartography
GoldenPath hg38 (UCSC)HSPA13  -     chr21:14371116-14383188 -  21q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSPA13  -     21q11.2   [Description]    (hg19-Feb_2009)
EnsemblHSPA13 - 21q11.2 [CytoView hg19]  HSPA13 - 21q11.2 [CytoView hg38]
Mapping of homologs : NCBIHSPA13 [Mapview hg19]  HSPA13 [Mapview hg38]
OMIM601100   
Gene and transcription
Genbank (Entrez)AA018751 AA767266 AI912654 AK128540 AK223282
RefSeq transcript (Entrez)NM_006948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSPA13
Cluster EST : UnigeneHs.352341 [ NCBI ]
CGAP (NCI)Hs.352341
Alternative Splicing GalleryENSG00000155304
Gene ExpressionHSPA13 [ NCBI-GEO ]   HSPA13 [ EBI - ARRAY_EXPRESS ]   HSPA13 [ SEEK ]   HSPA13 [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6782
GTEX Portal (Tissue expression)HSPA13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48723   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48723  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48723
Splice isoforms : SwissVarP48723
PhosPhoSitePlusP48723
Domaine pattern : Prosite (Expaxy)HSP70_1 (PS00297)    HSP70_2 (PS00329)    HSP70_3 (PS01036)   
Domains : Interpro (EBI)Heat_shock_70_CS    Hsp_70_fam   
Domain families : Pfam (Sanger)HSP70 (PF00012)   
Domain families : Pfam (NCBI)pfam00012   
Conserved Domain (NCBI)HSPA13
DMDM Disease mutations6782
Blocks (Seattle)HSPA13
SuperfamilyP48723
Human Protein AtlasENSG00000155304
Peptide AtlasP48723
HPRD03061
IPIIPI00299299   IPI01012244   
Protein Interaction databases
DIP (DOE-UCLA)P48723
IntAct (EBI)P48723
FunCoupENSG00000155304
BioGRIDHSPA13
STRING (EMBL)HSPA13
ZODIACHSPA13
Ontologies - Pathways
QuickGOP48723
Ontology : AmiGOprotein binding  ATP binding  endoplasmic reticulum  intracellular membrane-bounded organelle  extracellular exosome  
Ontology : EGO-EBIprotein binding  ATP binding  endoplasmic reticulum  intracellular membrane-bounded organelle  extracellular exosome  
NDEx NetworkHSPA13
Atlas of Cancer Signalling NetworkHSPA13
Wikipedia pathwaysHSPA13
Orthology - Evolution
OrthoDB6782
GeneTree (enSembl)ENSG00000155304
Phylogenetic Trees/Animal Genes : TreeFamHSPA13
HOVERGENP48723
HOGENOMP48723
Homologs : HomoloGeneHSPA13
Homology/Alignments : Family Browser (UCSC)HSPA13
Gene fusions - Rearrangements
Fusion : MitelmanRSF1/HSPA13 [11q14.1/21q11.2]  [t(11;21)(q14;q11)]  
Fusion: TCGARSF1 11q14.1 HSPA13 21q11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA13
dbVarHSPA13
ClinVarHSPA13
1000_GenomesHSPA13 
Exome Variant ServerHSPA13
ExAC (Exome Aggregation Consortium)HSPA13 (select the gene name)
Genetic variants : HAPMAP6782
Genomic Variants (DGV)HSPA13 [DGVbeta]
DECIPHERHSPA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSPA13 
Mutations
ICGC Data PortalHSPA13 
TCGA Data PortalHSPA13 
Broad Tumor PortalHSPA13
OASIS PortalHSPA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSPA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPA13
DgiDB (Drug Gene Interaction Database)HSPA13
DoCM (Curated mutations)HSPA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPA13 (select a term)
intoGenHSPA13
Cancer3DHSPA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601100   
Orphanet
MedgenHSPA13
Genetic Testing Registry HSPA13
NextProtP48723 [Medical]
TSGene6782
GENETestsHSPA13
Huge Navigator HSPA13 [HugePedia]
snp3D : Map Gene to Disease6782
BioCentury BCIQHSPA13
ClinGenHSPA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6782
Chemical/Pharm GKB GenePA162391697
Clinical trialHSPA13
Miscellaneous
canSAR (ICR)HSPA13 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPA13
EVEXHSPA13
GoPubMedHSPA13
iHOPHSPA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:38 CEST 2017

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