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HSPA13 (heat shock protein family A (Hsp70) member 13)

Identity

Alias (NCBI)STCH
HGNC (Hugo) HSPA13
HGNC Previous nameSTCH
HGNC Previous namestress 70 protein chaperone, microsome-associated, 60kD
 stress 70 protein chaperone, microsome-associated, 60kDa
 heat shock protein 70kDa family, member 13
LocusID (NCBI) 6782
Atlas_Id 46586
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 14371116 and ends at 14383146 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPA13 (21q11.2)::CCDC88C (14q32.11)HSPA13 (21q11.2)::HSPBP1 (19q13.42)RSF1 (11q14.1)::HSPA13 (21q11.2)
SLC25A1 (22q11.21)::HSPA13 (21q11.2)TIA1 (2p13.3)::HSPA13 (21q11.2)RSF1 11q14.1::HSPA13 21q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HSPA13   11375
Cards
Entrez_Gene (NCBI)HSPA13    heat shock protein family A (Hsp70) member 13
AliasesSTCH
GeneCards (Weizmann)HSPA13
Ensembl hg19 (Hinxton)ENSG00000155304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155304 [Gene_View]  ENSG00000155304 [Sequence]  chr21:14371116-14383146 [Contig_View]  HSPA13 [Vega]
ICGC DataPortalENSG00000155304
TCGA cBioPortalHSPA13
AceView (NCBI)HSPA13
Genatlas (Paris)HSPA13
SOURCE (Princeton)HSPA13
Genetics Home Reference (NIH)HSPA13
Genomic and cartography
GoldenPath hg38 (UCSC)HSPA13  -     chr21:14371116-14383146 -  21q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSPA13  -     21q11.2   [Description]    (hg19-Feb_2009)
GoldenPathHSPA13 - 21q11.2 [CytoView hg19]  HSPA13 - 21q11.2 [CytoView hg38]
ImmunoBaseENSG00000155304
Genome Data Viewer NCBIHSPA13 [Mapview hg19]  
OMIM601100   
Gene and transcription
Genbank (Entrez)AA018751 AA767266 AI912654 AK128540 AK223282
RefSeq transcript (Entrez)NM_006948
Consensus coding sequences : CCDS (NCBI)HSPA13
Gene ExpressionHSPA13 [ NCBI-GEO ]   HSPA13 [ EBI - ARRAY_EXPRESS ]   HSPA13 [ SEEK ]   HSPA13 [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA13 [ Firebrowse - Broad ]
GenevisibleExpression of HSPA13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6782
GTEX Portal (Tissue expression)HSPA13
Human Protein AtlasENSG00000155304-HSPA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48723   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48723  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48723
PhosPhoSitePlusP48723
Domaine pattern : Prosite (Expaxy)HSP70_1 (PS00297)    HSP70_2 (PS00329)    HSP70_3 (PS01036)   
Domains : Interpro (EBI)ATPase_NBD    Heat_shock_70_CS    Hsp_70_fam    HSPA13   
Domain families : Pfam (Sanger)HSP70 (PF00012)   
Domain families : Pfam (NCBI)pfam00012   
Conserved Domain (NCBI)HSPA13
SuperfamilyP48723
AlphaFold pdb e-kbP48723   
Human Protein Atlas [tissue]ENSG00000155304-HSPA13 [tissue]
HPRD03061
Protein Interaction databases
DIP (DOE-UCLA)P48723
IntAct (EBI)P48723
BioGRIDHSPA13
STRING (EMBL)HSPA13
ZODIACHSPA13
Ontologies - Pathways
QuickGOP48723
Ontology : AmiGOprotein binding  ATP binding  cytoplasm  mitochondrion  endoplasmic reticulum  ATP hydrolysis activity  heat shock protein binding  cellular response to unfolded protein  protein refolding  intracellular membrane-bounded organelle  protein folding chaperone  unfolded protein binding  chaperone cofactor-dependent protein refolding  misfolded protein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  ATP binding  cytoplasm  mitochondrion  endoplasmic reticulum  ATP hydrolysis activity  heat shock protein binding  cellular response to unfolded protein  protein refolding  intracellular membrane-bounded organelle  protein folding chaperone  unfolded protein binding  chaperone cofactor-dependent protein refolding  misfolded protein binding  extracellular exosome  
NDEx NetworkHSPA13
Atlas of Cancer Signalling NetworkHSPA13
Wikipedia pathwaysHSPA13
Orthology - Evolution
OrthoDB6782
GeneTree (enSembl)ENSG00000155304
Phylogenetic Trees/Animal Genes : TreeFamHSPA13
Homologs : HomoloGeneHSPA13
Homology/Alignments : Family Browser (UCSC)HSPA13
Gene fusions - Rearrangements
Fusion : MitelmanRSF1::HSPA13 [11q14.1/21q11.2]  
Fusion : QuiverHSPA13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA13
dbVarHSPA13
ClinVarHSPA13
MonarchHSPA13
1000_GenomesHSPA13 
Exome Variant ServerHSPA13
GNOMAD BrowserENSG00000155304
Varsome BrowserHSPA13
ACMGHSPA13 variants
VarityP48723
Genomic Variants (DGV)HSPA13 [DGVbeta]
DECIPHERHSPA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSPA13 
Mutations
ICGC Data PortalHSPA13 
TCGA Data PortalHSPA13 
Broad Tumor PortalHSPA13
OASIS PortalHSPA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPA13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHSPA13
Mutations and Diseases : HGMDHSPA13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHSPA13
DgiDB (Drug Gene Interaction Database)HSPA13
DoCM (Curated mutations)HSPA13
CIViC (Clinical Interpretations of Variants in Cancer)HSPA13
Cancer3DHSPA13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601100   
Orphanet
DisGeNETHSPA13
MedgenHSPA13
Genetic Testing Registry HSPA13
NextProtP48723 [Medical]
GENETestsHSPA13
Target ValidationHSPA13
Huge Navigator HSPA13 [HugePedia]
ClinGenHSPA13
Clinical trials, drugs, therapy
MyCancerGenomeHSPA13
Protein Interactions : CTDHSPA13
Pharm GKB GenePA162391697
PharosP48723
Clinical trialHSPA13
Miscellaneous
canSAR (ICR)HSPA13
HarmonizomeHSPA13
ARCHS4HSPA13
DataMed IndexHSPA13
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHSPA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:37:44 CET 2022

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