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HSPA4L (heat shock protein family A (Hsp70) member 4 like)

Identity

Alias_namesheat shock 70kDa protein 4-like
Alias_symbol (synonym)APG-1
Osp94
HSPH3
Other alias
HGNC (Hugo) HSPA4L
LocusID (NCBI) 22824
Atlas_Id 47179
Location 4q28.1  [Link to chromosome band 4q28]
Location_base_pair Starts at 128702976 and ends at 128755228 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HSPA4L (4q28.1) / DSP (6p24.3)HSPA4L (4q28.1) / SLC25A31 (4q28.1)HYPK (15q15.3) / HSPA4L (4q28.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPA4L   17041
Cards
Entrez_Gene (NCBI)HSPA4L  22824  heat shock protein family A (Hsp70) member 4 like
AliasesAPG-1; HSPH3; Osp94
GeneCards (Weizmann)HSPA4L
Ensembl hg19 (Hinxton)ENSG00000164070 [Gene_View]  chr4:128702976-128755228 [Contig_View]  HSPA4L [Vega]
Ensembl hg38 (Hinxton)ENSG00000164070 [Gene_View]  chr4:128702976-128755228 [Contig_View]  HSPA4L [Vega]
ICGC DataPortalENSG00000164070
TCGA cBioPortalHSPA4L
AceView (NCBI)HSPA4L
Genatlas (Paris)HSPA4L
WikiGenes22824
SOURCE (Princeton)HSPA4L
Genetics Home Reference (NIH)HSPA4L
Genomic and cartography
GoldenPath hg19 (UCSC)HSPA4L  -     chr4:128702976-128755228 +  4q28.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HSPA4L  -     4q28.1   [Description]    (hg38-Dec_2013)
EnsemblHSPA4L - 4q28.1 [CytoView hg19]  HSPA4L - 4q28.1 [CytoView hg38]
Mapping of homologs : NCBIHSPA4L [Mapview hg19]  HSPA4L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB023421 AK027822 AK302115 AK303053 AK307464
RefSeq transcript (Entrez)NM_001317381 NM_001317382 NM_001317383 NM_014278
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)HSPA4L
Cluster EST : UnigeneHs.135554 [ NCBI ]
CGAP (NCI)Hs.135554
Alternative Splicing GalleryENSG00000164070
Gene ExpressionHSPA4L [ NCBI-GEO ]   HSPA4L [ EBI - ARRAY_EXPRESS ]   HSPA4L [ SEEK ]   HSPA4L [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22824
GTEX Portal (Tissue expression)HSPA4L
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95757   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95757  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95757
Splice isoforms : SwissVarO95757
PhosPhoSitePlusO95757
Domaine pattern : Prosite (Expaxy)HSP70_3 (PS01036)   
Domains : Interpro (EBI)Heat_shock_70_CS    HSP70_C    HSP70_peptide-bd    Hsp_70_fam   
Domain families : Pfam (Sanger)HSP70 (PF00012)   
Domain families : Pfam (NCBI)pfam00012   
Conserved Domain (NCBI)HSPA4L
DMDM Disease mutations22824
Blocks (Seattle)HSPA4L
SuperfamilyO95757
Human Protein AtlasENSG00000164070
Peptide AtlasO95757
HPRD07137
IPIIPI00295485   IPI01012733   IPI00964409   IPI00964684   
Protein Interaction databases
DIP (DOE-UCLA)O95757
IntAct (EBI)O95757
FunCoupENSG00000164070
BioGRIDHSPA4L
STRING (EMBL)HSPA4L
ZODIACHSPA4L
Ontologies - Pathways
QuickGOO95757
Ontology : AmiGOATP binding  nucleus  cytoplasm  cytosol  protein folding  response to unfolded protein  
Ontology : EGO-EBIATP binding  nucleus  cytoplasm  cytosol  protein folding  response to unfolded protein  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkHSPA4L
Atlas of Cancer Signalling NetworkHSPA4L
Wikipedia pathwaysHSPA4L
Orthology - Evolution
OrthoDB22824
GeneTree (enSembl)ENSG00000164070
Phylogenetic Trees/Animal Genes : TreeFamHSPA4L
HOVERGENO95757
HOGENOMO95757
Homologs : HomoloGeneHSPA4L
Homology/Alignments : Family Browser (UCSC)HSPA4L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA4L
dbVarHSPA4L
ClinVarHSPA4L
1000_GenomesHSPA4L 
Exome Variant ServerHSPA4L
ExAC (Exome Aggregation Consortium)HSPA4L (select the gene name)
Genetic variants : HAPMAP22824
Genomic Variants (DGV)HSPA4L [DGVbeta]
DECIPHER (Syndromes)4:128702976-128755228  ENSG00000164070
CONAN: Copy Number AnalysisHSPA4L 
Mutations
ICGC Data PortalHSPA4L 
TCGA Data PortalHSPA4L 
Broad Tumor PortalHSPA4L
OASIS PortalHSPA4L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPA4L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSPA4L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPA4L
DgiDB (Drug Gene Interaction Database)HSPA4L
DoCM (Curated mutations)HSPA4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPA4L (select a term)
intoGenHSPA4L
Cancer3DHSPA4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHSPA4L
Genetic Testing Registry HSPA4L
NextProtO95757 [Medical]
TSGene22824
GENETestsHSPA4L
Huge Navigator HSPA4L [HugePedia]
snp3D : Map Gene to Disease22824
BioCentury BCIQHSPA4L
ClinGenHSPA4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22824
Chemical/Pharm GKB GenePA134905749
Clinical trialHSPA4L
Miscellaneous
canSAR (ICR)HSPA4L (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPA4L
EVEXHSPA4L
GoPubMedHSPA4L
iHOPHSPA4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:56 CET 2017

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