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HSPA7 (heat shock protein family A (Hsp70) member 7)

Identity

Alias_namesheat shock 70kD protein 7 (HSP70B)
heat shock 70kDa protein 7 (HSP70B)
Alias_symbol (synonym)HSP70B
Other alias
HGNC (Hugo) HSPA7
LocusID (NCBI) 3311
Atlas_Id 64458
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161606059 and ends at 161608551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPA7   5240
Cards
Entrez_Gene (NCBI)HSPA7  3311  heat shock protein family A (Hsp70) member 7
AliasesHSP70B
GeneCards (Weizmann)HSPA7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:161606059-161608551 [Contig_View]  HSPA7 [Vega]
TCGA cBioPortalHSPA7
AceView (NCBI)HSPA7
Genatlas (Paris)HSPA7
WikiGenes3311
SOURCE (Princeton)HSPA7
Genetics Home Reference (NIH)HSPA7
Genomic and cartography
GoldenPath hg38 (UCSC)HSPA7  -     chr1:161606059-161608551 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSPA7  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblHSPA7 - 1q23.3 [CytoView hg19]  HSPA7 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIHSPA7 [Mapview hg19]  HSPA7 [Mapview hg38]
OMIM140556   
Gene and transcription
Genbank (Entrez)BM677874 CA391777 DR004990
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSPA7
Cluster EST : UnigeneHs.662180 [ NCBI ]
CGAP (NCI)Hs.662180
Gene ExpressionHSPA7 [ NCBI-GEO ]   HSPA7 [ EBI - ARRAY_EXPRESS ]   HSPA7 [ SEEK ]   HSPA7 [ MEM ]
Gene Expression Viewer (FireBrowse)HSPA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3311
GTEX Portal (Tissue expression)HSPA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48741   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48741  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48741
Splice isoforms : SwissVarP48741
PhosPhoSitePlusP48741
Domaine pattern : Prosite (Expaxy)HSP70_1 (PS00297)    HSP70_2 (PS00329)   
Domains : Interpro (EBI)Heat_shock_70_CS    Hsp_70_fam   
Domain families : Pfam (Sanger)HSP70 (PF00012)   
Domain families : Pfam (NCBI)pfam00012   
Conserved Domain (NCBI)HSPA7
DMDM Disease mutations3311
Blocks (Seattle)HSPA7
SuperfamilyP48741
Peptide AtlasP48741
IPIIPI00011134   
Protein Interaction databases
DIP (DOE-UCLA)P48741
IntAct (EBI)P48741
BioGRIDHSPA7
STRING (EMBL)HSPA7
ZODIACHSPA7
Ontologies - Pathways
QuickGOP48741
Ontology : AmiGOmolecular_function  ATP binding  biological_process  COP9 signalosome  extracellular exosome  blood microparticle  
Ontology : EGO-EBImolecular_function  ATP binding  biological_process  COP9 signalosome  extracellular exosome  blood microparticle  
NDEx NetworkHSPA7
Atlas of Cancer Signalling NetworkHSPA7
Wikipedia pathwaysHSPA7
Orthology - Evolution
OrthoDB3311
Phylogenetic Trees/Animal Genes : TreeFamHSPA7
HOVERGENP48741
HOGENOMP48741
Homologs : HomoloGeneHSPA7
Homology/Alignments : Family Browser (UCSC)HSPA7
Gene fusions - Rearrangements
Tumor Fusion PortalHSPA7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPA7
dbVarHSPA7
ClinVarHSPA7
1000_GenomesHSPA7 
Exome Variant ServerHSPA7
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP3311
Genomic Variants (DGV)HSPA7 [DGVbeta]
DECIPHERHSPA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSPA7 
Mutations
ICGC Data PortalHSPA7 
TCGA Data PortalHSPA7 
Broad Tumor PortalHSPA7
OASIS PortalHSPA7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHSPA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPA7
DgiDB (Drug Gene Interaction Database)HSPA7
DoCM (Curated mutations)HSPA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPA7 (select a term)
intoGenHSPA7
Cancer3DHSPA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM140556   
Orphanet
DisGeNETHSPA7
MedgenHSPA7
Genetic Testing Registry HSPA7
NextProtP48741 [Medical]
TSGene3311
GENETestsHSPA7
Target ValidationHSPA7
Huge Navigator HSPA7 [HugePedia]
snp3D : Map Gene to Disease3311
BioCentury BCIQHSPA7
ClinGenHSPA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3311
Chemical/Pharm GKB GenePA29506
Clinical trialHSPA7
Miscellaneous
canSAR (ICR)HSPA7 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPA7
EVEXHSPA7
GoPubMedHSPA7
iHOPHSPA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:28 CET 2017

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