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HSPB9 (heat shock protein family B (small) member 9)

Identity

Alias_namesheat shock protein
Alias_symbol (synonym)CT51
Other alias
HGNC (Hugo) HSPB9
LocusID (NCBI) 94086
Atlas_Id 46880
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42122738 and ends at 42123353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HSPB9   30589
Cards
Entrez_Gene (NCBI)HSPB9  94086  heat shock protein family B (small) member 9
AliasesCT51
GeneCards (Weizmann)HSPB9
Ensembl hg19 (Hinxton)ENSG00000260325 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260325 [Gene_View]  chr17:42122738-42123353 [Contig_View]  HSPB9 [Vega]
ICGC DataPortalENSG00000260325
TCGA cBioPortalHSPB9
AceView (NCBI)HSPB9
Genatlas (Paris)HSPB9
WikiGenes94086
SOURCE (Princeton)HSPB9
Genetics Home Reference (NIH)HSPB9
Genomic and cartography
GoldenPath hg38 (UCSC)HSPB9  -     chr17:42122738-42123353 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HSPB9  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblHSPB9 - 17q21.2 [CytoView hg19]  HSPB9 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIHSPB9 [Mapview hg19]  HSPB9 [Mapview hg38]
OMIM608344   
Gene and transcription
Genbank (Entrez)AK093488 AK130947 BC093991 BC093993 BX280091
RefSeq transcript (Entrez)NM_033194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HSPB9
Cluster EST : UnigeneHs.620611 [ NCBI ]
CGAP (NCI)Hs.620611
Alternative Splicing GalleryENSG00000260325
Gene ExpressionHSPB9 [ NCBI-GEO ]   HSPB9 [ EBI - ARRAY_EXPRESS ]   HSPB9 [ SEEK ]   HSPB9 [ MEM ]
Gene Expression Viewer (FireBrowse)HSPB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94086
GTEX Portal (Tissue expression)HSPB9
Human Protein AtlasENSG00000260325-HSPB9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQS6
Splice isoforms : SwissVarQ9BQS6
PhosPhoSitePlusQ9BQS6
Domaine pattern : Prosite (Expaxy)HSP20 (PS01031)   
Domains : Interpro (EBI)A-crystallin/Hsp20_dom    HSP20    HSP20-like_chaperone   
Domain families : Pfam (Sanger)HSP20 (PF00011)   
Domain families : Pfam (NCBI)pfam00011   
Conserved Domain (NCBI)HSPB9
DMDM Disease mutations94086
Blocks (Seattle)HSPB9
SuperfamilyQ9BQS6
Human Protein Atlas [tissue]ENSG00000260325-HSPB9 [tissue]
Peptide AtlasQ9BQS6
HPRD16319
IPIIPI00016766   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQS6
IntAct (EBI)Q9BQS6
FunCoupENSG00000260325
BioGRIDHSPB9
STRING (EMBL)HSPB9
ZODIACHSPB9
Ontologies - Pathways
QuickGOQ9BQS6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  
NDEx NetworkHSPB9
Atlas of Cancer Signalling NetworkHSPB9
Wikipedia pathwaysHSPB9
Orthology - Evolution
OrthoDB94086
GeneTree (enSembl)ENSG00000260325
Phylogenetic Trees/Animal Genes : TreeFamHSPB9
HOVERGENQ9BQS6
HOGENOMQ9BQS6
Homologs : HomoloGeneHSPB9
Homology/Alignments : Family Browser (UCSC)HSPB9
Gene fusions - Rearrangements
Tumor Fusion PortalHSPB9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHSPB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HSPB9
dbVarHSPB9
ClinVarHSPB9
1000_GenomesHSPB9 
Exome Variant ServerHSPB9
ExAC (Exome Aggregation Consortium)ENSG00000260325
GNOMAD BrowserENSG00000260325
Genetic variants : HAPMAP94086
Genomic Variants (DGV)HSPB9 [DGVbeta]
DECIPHERHSPB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHSPB9 
Mutations
ICGC Data PortalHSPB9 
TCGA Data PortalHSPB9 
Broad Tumor PortalHSPB9
OASIS PortalHSPB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHSPB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHSPB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HSPB9
DgiDB (Drug Gene Interaction Database)HSPB9
DoCM (Curated mutations)HSPB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HSPB9 (select a term)
intoGenHSPB9
Cancer3DHSPB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608344   
Orphanet
DisGeNETHSPB9
MedgenHSPB9
Genetic Testing Registry HSPB9
NextProtQ9BQS6 [Medical]
TSGene94086
GENETestsHSPB9
Target ValidationHSPB9
Huge Navigator HSPB9 [HugePedia]
snp3D : Map Gene to Disease94086
BioCentury BCIQHSPB9
ClinGenHSPB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94086
Chemical/Pharm GKB GenePA134875756
Clinical trialHSPB9
Miscellaneous
canSAR (ICR)HSPB9 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHSPB9
EVEXHSPB9
GoPubMedHSPB9
iHOPHSPB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:17:03 CET 2017

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