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HTATSF1 (HIV-1 Tat specific factor 1)

Identity

Alias_namesHIV TAT specific factor 1
Alias_symbol (synonym)TAT-SF1
Other aliasTATSF1
dJ196E23.2
HGNC (Hugo) HTATSF1
LocusID (NCBI) 27336
Atlas_Id 64462
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 136497079 and ends at 136512344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HTATSF1 (Xq26.3) / BRS3 (Xq26.3)HTATSF1 (Xq26.3) / GAS6 (13q34)HTATSF1 (Xq26.3) / HTATSF1 (Xq26.3)
HTATSF1 (Xq26.3) / PTMA (2q37.1)S100A16 (1q21.3) / HTATSF1 (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTATSF1   5276
Cards
Entrez_Gene (NCBI)HTATSF1  27336  HIV-1 Tat specific factor 1
AliasesTAT-SF1; TATSF1; dJ196E23.2
GeneCards (Weizmann)HTATSF1
Ensembl hg19 (Hinxton)ENSG00000102241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102241 [Gene_View]  chrX:136497079-136512344 [Contig_View]  HTATSF1 [Vega]
ICGC DataPortalENSG00000102241
TCGA cBioPortalHTATSF1
AceView (NCBI)HTATSF1
Genatlas (Paris)HTATSF1
WikiGenes27336
SOURCE (Princeton)HTATSF1
Genetics Home Reference (NIH)HTATSF1
Genomic and cartography
GoldenPath hg38 (UCSC)HTATSF1  -     chrX:136497079-136512344 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTATSF1  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblHTATSF1 - Xq26.3 [CytoView hg19]  HTATSF1 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIHTATSF1 [Mapview hg19]  HTATSF1 [Mapview hg38]
OMIM300346   
Gene and transcription
Genbank (Entrez)AB209303 AK225870 AK299403 BC009896 BT006886
RefSeq transcript (Entrez)NM_001163280 NM_014500
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTATSF1
Cluster EST : UnigeneHs.204475 [ NCBI ]
CGAP (NCI)Hs.204475
Alternative Splicing GalleryENSG00000102241
Gene ExpressionHTATSF1 [ NCBI-GEO ]   HTATSF1 [ EBI - ARRAY_EXPRESS ]   HTATSF1 [ SEEK ]   HTATSF1 [ MEM ]
Gene Expression Viewer (FireBrowse)HTATSF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27336
GTEX Portal (Tissue expression)HTATSF1
Human Protein AtlasENSG00000102241-HTATSF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43719   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43719  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43719
Splice isoforms : SwissVarO43719
PhosPhoSitePlusO43719
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HTATSF1
DMDM Disease mutations27336
Blocks (Seattle)HTATSF1
PDB (SRS)2DIT   
PDB (PDBSum)2DIT   
PDB (IMB)2DIT   
PDB (RSDB)2DIT   
Structural Biology KnowledgeBase2DIT   
SCOP (Structural Classification of Proteins)2DIT   
CATH (Classification of proteins structures)2DIT   
SuperfamilyO43719
Human Protein Atlas [tissue]ENSG00000102241-HTATSF1 [tissue]
Peptide AtlasO43719
HPRD02282
IPIIPI00013788   IPI00644220   IPI00644724   
Protein Interaction databases
DIP (DOE-UCLA)O43719
IntAct (EBI)O43719
FunCoupENSG00000102241
BioGRIDHTATSF1
STRING (EMBL)HTATSF1
ZODIACHTATSF1
Ontologies - Pathways
QuickGOO43719
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  RNA binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U2 snRNP  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  viral genome replication  regulation of DNA-templated transcription, elongation  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  RNA binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U2 snRNP  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  viral genome replication  regulation of DNA-templated transcription, elongation  
NDEx NetworkHTATSF1
Atlas of Cancer Signalling NetworkHTATSF1
Wikipedia pathwaysHTATSF1
Orthology - Evolution
OrthoDB27336
GeneTree (enSembl)ENSG00000102241
Phylogenetic Trees/Animal Genes : TreeFamHTATSF1
HOVERGENO43719
HOGENOMO43719
Homologs : HomoloGeneHTATSF1
Homology/Alignments : Family Browser (UCSC)HTATSF1
Gene fusions - Rearrangements
Tumor Fusion PortalHTATSF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTATSF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTATSF1
dbVarHTATSF1
ClinVarHTATSF1
1000_GenomesHTATSF1 
Exome Variant ServerHTATSF1
ExAC (Exome Aggregation Consortium)ENSG00000102241
GNOMAD BrowserENSG00000102241
Genetic variants : HAPMAP27336
Genomic Variants (DGV)HTATSF1 [DGVbeta]
DECIPHERHTATSF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTATSF1 
Mutations
ICGC Data PortalHTATSF1 
TCGA Data PortalHTATSF1 
Broad Tumor PortalHTATSF1
OASIS PortalHTATSF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTATSF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHTATSF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch HTATSF1
DgiDB (Drug Gene Interaction Database)HTATSF1
DoCM (Curated mutations)HTATSF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTATSF1 (select a term)
intoGenHTATSF1
Cancer3DHTATSF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300346   
Orphanet
DisGeNETHTATSF1
MedgenHTATSF1
Genetic Testing Registry HTATSF1
NextProtO43719 [Medical]
TSGene27336
GENETestsHTATSF1
Target ValidationHTATSF1
Huge Navigator HTATSF1 [HugePedia]
snp3D : Map Gene to Disease27336
BioCentury BCIQHTATSF1
ClinGenHTATSF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27336
Chemical/Pharm GKB GenePA29540
Clinical trialHTATSF1
Miscellaneous
canSAR (ICR)HTATSF1 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTATSF1
EVEXHTATSF1
GoPubMedHTATSF1
iHOPHTATSF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:47 CET 2017

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