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HTATSF1 (HIV-1 Tat specific factor 1)

Identity

Alias (NCBI)TAT-SF1
TATSF1
dJ196E23.2
HGNC (Hugo) HTATSF1
HGNC Alias symbTAT-SF1
HGNC Previous nameHIV TAT specific factor 1
LocusID (NCBI) 27336
Atlas_Id 64462
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 136497592 and ends at 136512344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HTATSF1 (Xq26.3) / BRS3 (Xq26.3)HTATSF1 (Xq26.3) / GAS6 (13q34)HTATSF1 (Xq26.3) / HTATSF1 (Xq26.3)
HTATSF1 (Xq26.3) / PTMA (2q37.1)S100A16 (1q21.3) / HTATSF1 (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HTATSF1   5276
Cards
Entrez_Gene (NCBI)HTATSF1    HIV-1 Tat specific factor 1
AliasesTAT-SF1; TATSF1; dJ196E23.2
GeneCards (Weizmann)HTATSF1
Ensembl hg19 (Hinxton)ENSG00000102241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102241 [Gene_View]  ENSG00000102241 [Sequence]  chrX:136497592-136512344 [Contig_View]  HTATSF1 [Vega]
ICGC DataPortalENSG00000102241
TCGA cBioPortalHTATSF1
AceView (NCBI)HTATSF1
Genatlas (Paris)HTATSF1
SOURCE (Princeton)HTATSF1
Genetics Home Reference (NIH)HTATSF1
Genomic and cartography
GoldenPath hg38 (UCSC)HTATSF1  -     chrX:136497592-136512344 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTATSF1  -     Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPathHTATSF1 - Xq26.3 [CytoView hg19]  HTATSF1 - Xq26.3 [CytoView hg38]
ImmunoBaseENSG00000102241
Genome Data Viewer NCBIHTATSF1 [Mapview hg19]  
OMIM300346   
Gene and transcription
Genbank (Entrez)AB209303 AK225870 AK299403 BC009896 BT006886
RefSeq transcript (Entrez)NM_001163280 NM_014500
Consensus coding sequences : CCDS (NCBI)HTATSF1
Gene ExpressionHTATSF1 [ NCBI-GEO ]   HTATSF1 [ EBI - ARRAY_EXPRESS ]   HTATSF1 [ SEEK ]   HTATSF1 [ MEM ]
Gene Expression Viewer (FireBrowse)HTATSF1 [ Firebrowse - Broad ]
GenevisibleExpression of HTATSF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27336
GTEX Portal (Tissue expression)HTATSF1
Human Protein AtlasENSG00000102241-HTATSF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43719   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43719  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43719
PhosPhoSitePlusO43719
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    TatSF1-like    TatSF1-like_RRM1   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HTATSF1
PDB (RSDB)2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
PDB Europe2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
PDB (PDBSum)2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
PDB (IMB)2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
Structural Biology KnowledgeBase2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
SCOP (Structural Classification of Proteins)2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
CATH (Classification of proteins structures)2DIT    6N3D    6N3E    6N3F    6NSX    6Y50    6Y53    6Y5Q   
SuperfamilyO43719
AlphaFold pdb e-kbO43719   
Human Protein Atlas [tissue]ENSG00000102241-HTATSF1 [tissue]
HPRD02282
Protein Interaction databases
DIP (DOE-UCLA)O43719
IntAct (EBI)O43719
BioGRIDHTATSF1
STRING (EMBL)HTATSF1
ZODIACHTATSF1
Ontologies - Pathways
QuickGOO43719
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  RNA binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U2 snRNP  regulation of transcription by RNA polymerase II  viral genome replication  regulation of DNA-templated transcription, elongation  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  RNA binding  nucleus  nucleoplasm  U2-type spliceosomal complex  U2 snRNP  regulation of transcription by RNA polymerase II  viral genome replication  regulation of DNA-templated transcription, elongation  
NDEx NetworkHTATSF1
Atlas of Cancer Signalling NetworkHTATSF1
Wikipedia pathwaysHTATSF1
Orthology - Evolution
OrthoDB27336
GeneTree (enSembl)ENSG00000102241
Phylogenetic Trees/Animal Genes : TreeFamHTATSF1
Homologs : HomoloGeneHTATSF1
Homology/Alignments : Family Browser (UCSC)HTATSF1
Gene fusions - Rearrangements
Fusion : QuiverHTATSF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTATSF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTATSF1
dbVarHTATSF1
ClinVarHTATSF1
MonarchHTATSF1
1000_GenomesHTATSF1 
Exome Variant ServerHTATSF1
GNOMAD BrowserENSG00000102241
Varsome BrowserHTATSF1
ACMGHTATSF1 variants
VarityO43719
Genomic Variants (DGV)HTATSF1 [DGVbeta]
DECIPHERHTATSF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTATSF1 
Mutations
ICGC Data PortalHTATSF1 
TCGA Data PortalHTATSF1 
Broad Tumor PortalHTATSF1
OASIS PortalHTATSF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTATSF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHTATSF1
Mutations and Diseases : HGMDHTATSF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHTATSF1
DgiDB (Drug Gene Interaction Database)HTATSF1
DoCM (Curated mutations)HTATSF1
CIViC (Clinical Interpretations of Variants in Cancer)HTATSF1
Cancer3DHTATSF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300346   
Orphanet
DisGeNETHTATSF1
MedgenHTATSF1
Genetic Testing Registry HTATSF1
NextProtO43719 [Medical]
GENETestsHTATSF1
Target ValidationHTATSF1
Huge Navigator HTATSF1 [HugePedia]
ClinGenHTATSF1
Clinical trials, drugs, therapy
MyCancerGenomeHTATSF1
Protein Interactions : CTDHTATSF1
Pharm GKB GenePA29540
PharosO43719
Clinical trialHTATSF1
Miscellaneous
canSAR (ICR)HTATSF1
HarmonizomeHTATSF1
DataMed IndexHTATSF1
Probes
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHTATSF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:19 CEST 2021

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