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HTATSF1P2 (HIV-1 Tat specific factor 1 pseudogene 2)

Identity

Other alias-
HGNC (Hugo) HTATSF1P2
LocusID (NCBI) 401233
Atlas_Id 64463
Location 6p25.2  [Link to chromosome band 6p25]
Location_base_pair Starts at 3018981 and ends at 3023896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTATSF1P2   38586
Cards
Entrez_Gene (NCBI)HTATSF1P2  401233  HIV-1 Tat specific factor 1 pseudogene 2
Aliases
GeneCards (Weizmann)HTATSF1P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:3018981-3023896 [Contig_View]  HTATSF1P2 [Vega]
TCGA cBioPortalHTATSF1P2
AceView (NCBI)HTATSF1P2
Genatlas (Paris)HTATSF1P2
WikiGenes401233
SOURCE (Princeton)HTATSF1P2
Genetics Home Reference (NIH)HTATSF1P2
Genomic and cartography
GoldenPath hg38 (UCSC)HTATSF1P2  -     chr6:3018981-3023896 -  6p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTATSF1P2  -     6p25.2   [Description]    (hg19-Feb_2009)
EnsemblHTATSF1P2 - 6p25.2 [CytoView hg19]  HTATSF1P2 - 6p25.2 [CytoView hg38]
Mapping of homologs : NCBIHTATSF1P2 [Mapview hg19]  HTATSF1P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128391 BX648511
RefSeq transcript (Entrez)NM_001013680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTATSF1P2
Cluster EST : UnigeneHs.745279 [ NCBI ]
CGAP (NCI)Hs.745279
Gene ExpressionHTATSF1P2 [ NCBI-GEO ]   HTATSF1P2 [ EBI - ARRAY_EXPRESS ]   HTATSF1P2 [ SEEK ]   HTATSF1P2 [ MEM ]
Gene Expression Viewer (FireBrowse)HTATSF1P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401233
GTEX Portal (Tissue expression)HTATSF1P2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HTATSF1P2
DMDM Disease mutations401233
Blocks (Seattle)HTATSF1P2
HPRD18424
IPIIPI00418739   
Protein Interaction databases
BioGRIDHTATSF1P2
STRING (EMBL)HTATSF1P2
ZODIACHTATSF1P2
Ontologies - Pathways
Huge Navigator HTATSF1P2 [HugePedia]
snp3D : Map Gene to Disease401233
BioCentury BCIQHTATSF1P2
ClinGenHTATSF1P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401233
Chemical/Pharm GKB GenePA165617945
Clinical trialHTATSF1P2
Miscellaneous
canSAR (ICR)HTATSF1P2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTATSF1P2
EVEXHTATSF1P2
GoPubMedHTATSF1P2
iHOPHTATSF1P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:49:28 CEST 2018

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