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HTD2 (hydroxyacyl-thioester dehydratase type 2)

Identity

Other alias-
HGNC (Hugo) HTD2
LocusID (NCBI) 109703458
Atlas_Id 79873
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 58306245 and ends at 58320193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HTD2   53111
Cards
Entrez_Gene (NCBI)HTD2  109703458  hydroxyacyl-thioester dehydratase type 2
Aliases
GeneCards (Weizmann)HTD2
Ensembl hg19 (Hinxton)ENSG00000255154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255154 [Gene_View]  chr3:58306245-58320193 [Contig_View]  HTD2 [Vega]
ICGC DataPortalENSG00000255154
TCGA cBioPortalHTD2
AceView (NCBI)HTD2
Genatlas (Paris)HTD2
WikiGenes109703458
SOURCE (Princeton)HTD2
Genetics Home Reference (NIH)HTD2
Genomic and cartography
GoldenPath hg38 (UCSC)HTD2  -     chr3:58306245-58320193 +  3p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTD2  -     3p14.3   [Description]    (hg19-Feb_2009)
EnsemblHTD2 - 3p14.3 [CytoView hg19]  HTD2 - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBIHTD2 [Mapview hg19]  HTD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311396 AV760694 BP352444 CD698741 DC303206
RefSeq transcript (Entrez)NM_001348712 NM_001348713 NM_001348714 NM_001348715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTD2
Cluster EST : UnigeneHs.446320 [ NCBI ]
CGAP (NCI)Hs.446320
Alternative Splicing GalleryENSG00000255154
Gene ExpressionHTD2 [ NCBI-GEO ]   HTD2 [ EBI - ARRAY_EXPRESS ]   HTD2 [ SEEK ]   HTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)HTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)109703458
GTEX Portal (Tissue expression)HTD2
Human Protein AtlasENSG00000255154-HTD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86397   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86397  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86397
Splice isoforms : SwissVarP86397
Catalytic activity : Enzyme4.2.1.- [ Enzyme-Expasy ]   4.2.1.-4.2.1.- [ IntEnz-EBI ]   4.2.1.- [ BRENDA ]   4.2.1.- [ KEGG ]   
PhosPhoSitePlusP86397
Domains : Interpro (EBI)HotDog_dom    MaoC_dom   
Domain families : Pfam (Sanger)MaoC_dehydratas (PF01575)   
Domain families : Pfam (NCBI)pfam01575   
Conserved Domain (NCBI)HTD2
DMDM Disease mutations109703458
Blocks (Seattle)HTD2
PDB (SRS)3IR3   
PDB (PDBSum)3IR3   
PDB (IMB)3IR3   
PDB (RSDB)3IR3   
Structural Biology KnowledgeBase3IR3   
SCOP (Structural Classification of Proteins)3IR3   
CATH (Classification of proteins structures)3IR3   
SuperfamilyP86397
Human Protein Atlas [tissue]ENSG00000255154-HTD2 [tissue]
Peptide AtlasP86397
Protein Interaction databases
DIP (DOE-UCLA)P86397
IntAct (EBI)P86397
FunCoupENSG00000255154
BioGRIDHTD2
STRING (EMBL)HTD2
ZODIACHTD2
Ontologies - Pathways
QuickGOP86397
Ontology : AmiGOnucleolus  mitochondrion  mitochondrial matrix  fatty acid metabolic process  3-hydroxyacyl-CoA dehydratase activity  fatty-acyl-CoA biosynthetic process  
Ontology : EGO-EBInucleolus  mitochondrion  mitochondrial matrix  fatty acid metabolic process  3-hydroxyacyl-CoA dehydratase activity  fatty-acyl-CoA biosynthetic process  
NDEx NetworkHTD2
Atlas of Cancer Signalling NetworkHTD2
Wikipedia pathwaysHTD2
Orthology - Evolution
OrthoDB109703458
GeneTree (enSembl)ENSG00000255154
Phylogenetic Trees/Animal Genes : TreeFamHTD2
HOVERGENP86397
HOGENOMP86397
Homologs : HomoloGeneHTD2
Homology/Alignments : Family Browser (UCSC)HTD2
Gene fusions - Rearrangements
Tumor Fusion PortalHTD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTD2
dbVarHTD2
ClinVarHTD2
1000_GenomesHTD2 
Exome Variant ServerHTD2
ExAC (Exome Aggregation Consortium)ENSG00000255154
GNOMAD BrowserENSG00000255154
Genetic variants : HAPMAP109703458
Genomic Variants (DGV)HTD2 [DGVbeta]
DECIPHERHTD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTD2 
Mutations
ICGC Data PortalHTD2 
TCGA Data PortalHTD2 
Broad Tumor PortalHTD2
OASIS PortalHTD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHTD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HTD2
DgiDB (Drug Gene Interaction Database)HTD2
DoCM (Curated mutations)HTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTD2 (select a term)
intoGenHTD2
Cancer3DHTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHTD2
MedgenHTD2
Genetic Testing Registry HTD2
NextProtP86397 [Medical]
TSGene109703458
GENETestsHTD2
Target ValidationHTD2
Huge Navigator HTD2 [HugePedia]
snp3D : Map Gene to Disease109703458
BioCentury BCIQHTD2
ClinGenHTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109703458
Clinical trialHTD2
Miscellaneous
canSAR (ICR)HTD2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTD2
EVEXHTD2
GoPubMedHTD2
iHOPHTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:39 CET 2017

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