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HTN1 (histatin 1)

Identity

Other aliasHIS1
HGNC (Hugo) HTN1
LocusID (NCBI) 3346
Atlas_Id 57190
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70050442 and ends at 70058842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HTN1 (4q13.3) / KYNU (2q22.2)SLC12A8 (3q21.2) / HTN1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTN1   5283
Cards
Entrez_Gene (NCBI)HTN1  3346  histatin 1
AliasesHIS1
GeneCards (Weizmann)HTN1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:70050442-70058842 [Contig_View]  HTN1 [Vega]
TCGA cBioPortalHTN1
AceView (NCBI)HTN1
Genatlas (Paris)HTN1
WikiGenes3346
SOURCE (Princeton)HTN1
Genetics Home Reference (NIH)HTN1
Genomic and cartography
GoldenPath hg38 (UCSC)HTN1  -     chr4:70050442-70058842 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTN1  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblHTN1 - 4q13.3 [CytoView hg19]  HTN1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIHTN1 [Mapview hg19]  HTN1 [Mapview hg38]
OMIM142701   
Gene and transcription
Genbank (Entrez)BC017835 BP335073 CB984538 CR627329 M26664
RefSeq transcript (Entrez)NM_002159
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTN1
Cluster EST : UnigeneHs.250959 [ NCBI ]
CGAP (NCI)Hs.250959
Gene ExpressionHTN1 [ NCBI-GEO ]   HTN1 [ EBI - ARRAY_EXPRESS ]   HTN1 [ SEEK ]   HTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)HTN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3346
GTEX Portal (Tissue expression)HTN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15515   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15515  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15515
Splice isoforms : SwissVarP15515
PhosPhoSitePlusP15515
Domains : Interpro (EBI)Histatin-1/3    Histatin/statherin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HTN1
DMDM Disease mutations3346
Blocks (Seattle)HTN1
SuperfamilyP15515
Peptide AtlasP15515
IPIIPI00012024   
Protein Interaction databases
DIP (DOE-UCLA)P15515
IntAct (EBI)P15515
BioGRIDHTN1
STRING (EMBL)HTN1
ZODIACHTN1
Ontologies - Pathways
QuickGOP15515
Ontology : AmiGOprotein binding  extracellular region  extracellular region  antimicrobial humoral response  biomineral tissue development  killing of cells of other organism  defense response to bacterium  defense response to fungus  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular region  antimicrobial humoral response  biomineral tissue development  killing of cells of other organism  defense response to bacterium  defense response to fungus  
Pathways : KEGGSalivary secretion   
NDEx NetworkHTN1
Atlas of Cancer Signalling NetworkHTN1
Wikipedia pathwaysHTN1
Orthology - Evolution
OrthoDB3346
Phylogenetic Trees/Animal Genes : TreeFamHTN1
HOVERGENP15515
HOGENOMP15515
Homologs : HomoloGeneHTN1
Homology/Alignments : Family Browser (UCSC)HTN1
Gene fusions - Rearrangements
Fusion: Tumor Portal HTN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTN1
dbVarHTN1
ClinVarHTN1
1000_GenomesHTN1 
Exome Variant ServerHTN1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP3346
Genomic Variants (DGV)HTN1 [DGVbeta]
DECIPHERHTN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTN1 
Mutations
ICGC Data PortalHTN1 
TCGA Data PortalHTN1 
Broad Tumor PortalHTN1
OASIS PortalHTN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHTN1
BioMutasearch HTN1
DgiDB (Drug Gene Interaction Database)HTN1
DoCM (Curated mutations)HTN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTN1 (select a term)
intoGenHTN1
Cancer3DHTN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142701   
Orphanet
MedgenHTN1
Genetic Testing Registry HTN1
NextProtP15515 [Medical]
TSGene3346
GENETestsHTN1
Target ValidationHTN1
Huge Navigator HTN1 [HugePedia]
snp3D : Map Gene to Disease3346
BioCentury BCIQHTN1
ClinGenHTN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3346
Chemical/Pharm GKB GenePA29546
Clinical trialHTN1
Miscellaneous
canSAR (ICR)HTN1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTN1
EVEXHTN1
GoPubMedHTN1
iHOPHTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:53:40 CET 2017

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