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HTR1F (5-hydroxytryptamine receptor 1F)

Identity

Alias (NCBI)5-HT-1F
5-HT1F
5HT6
HTR1EL
MR77
HGNC (Hugo) HTR1F
HGNC Alias symbHTR1EL
5-HT1F
HGNC Previous name5-hydroxytryptamine (serotonin) receptor 1F
 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled
LocusID (NCBI) 3355
Atlas_Id 64465
Location 3p11.2  [Link to chromosome band 3p11]
Location_base_pair Starts at 87792706 and ends at 87993838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HTR1F   5292
Cards
Entrez_Gene (NCBI)HTR1F    5-hydroxytryptamine receptor 1F
Aliases5-HT-1F; 5-HT1F; 5HT6; HTR1EL; 
MR77
GeneCards (Weizmann)HTR1F
Ensembl hg19 (Hinxton)ENSG00000179097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179097 [Gene_View]  ENSG00000179097 [Sequence]  chr3:87792706-87993838 [Contig_View]  HTR1F [Vega]
ICGC DataPortalENSG00000179097
TCGA cBioPortalHTR1F
AceView (NCBI)HTR1F
Genatlas (Paris)HTR1F
SOURCE (Princeton)HTR1F
Genetics Home Reference (NIH)HTR1F
Genomic and cartography
GoldenPath hg38 (UCSC)HTR1F  -     chr3:87792706-87993838 +  3p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTR1F  -     3p11.2   [Description]    (hg19-Feb_2009)
GoldenPathHTR1F - 3p11.2 [CytoView hg19]  HTR1F - 3p11.2 [CytoView hg38]
ImmunoBaseENSG00000179097
Genome Data Viewer NCBIHTR1F [Mapview hg19]  
OMIM182134   
Gene and transcription
Genbank (Entrez)AF498981 BC069125 BC096838 BX357988 CA942616
RefSeq transcript (Entrez)NM_000866 NM_001322208 NM_001322209 NM_001322210
Consensus coding sequences : CCDS (NCBI)HTR1F
Gene ExpressionHTR1F [ NCBI-GEO ]   HTR1F [ EBI - ARRAY_EXPRESS ]   HTR1F [ SEEK ]   HTR1F [ MEM ]
Gene Expression Viewer (FireBrowse)HTR1F [ Firebrowse - Broad ]
GenevisibleExpression of HTR1F in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3355
GTEX Portal (Tissue expression)HTR1F
Human Protein AtlasENSG00000179097-HTR1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30939   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30939  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30939
PhosPhoSitePlusP30939
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)5HT1F_rcpt    5HT_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)HTR1F
SuperfamilyP30939
AlphaFold pdb e-kbP30939   
Human Protein Atlas [tissue]ENSG00000179097-HTR1F [tissue]
HPRD01637
Protein Interaction databases
DIP (DOE-UCLA)P30939
IntAct (EBI)P30939
BioGRIDHTR1F
STRING (EMBL)HTR1F
ZODIACHTR1F
Ontologies - Pathways
QuickGOP30939
Ontology : AmiGOG protein-coupled serotonin receptor activity  G protein-coupled serotonin receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway  adenylate cyclase-inhibiting serotonin receptor signaling pathway  chemical synaptic transmission  dendrite  neurotransmitter receptor activity  synapse  serotonin binding  serotonin binding  
Ontology : EGO-EBIG protein-coupled serotonin receptor activity  G protein-coupled serotonin receptor activity  G protein-coupled serotonin receptor activity  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway  adenylate cyclase-inhibiting serotonin receptor signaling pathway  chemical synaptic transmission  dendrite  neurotransmitter receptor activity  synapse  serotonin binding  serotonin binding  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkHTR1F
Atlas of Cancer Signalling NetworkHTR1F
Wikipedia pathwaysHTR1F
Orthology - Evolution
OrthoDB3355
GeneTree (enSembl)ENSG00000179097
Phylogenetic Trees/Animal Genes : TreeFamHTR1F
Homologs : HomoloGeneHTR1F
Homology/Alignments : Family Browser (UCSC)HTR1F
Gene fusions - Rearrangements
Fusion : QuiverHTR1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTR1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTR1F
dbVarHTR1F
ClinVarHTR1F
MonarchHTR1F
1000_GenomesHTR1F 
Exome Variant ServerHTR1F
GNOMAD BrowserENSG00000179097
Varsome BrowserHTR1F
ACMGHTR1F variants
VarityP30939
Genomic Variants (DGV)HTR1F [DGVbeta]
DECIPHERHTR1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTR1F 
Mutations
ICGC Data PortalHTR1F 
TCGA Data PortalHTR1F 
Broad Tumor PortalHTR1F
OASIS PortalHTR1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTR1F  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHTR1F
Mutations and Diseases : HGMDHTR1F
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHTR1F
DgiDB (Drug Gene Interaction Database)HTR1F
DoCM (Curated mutations)HTR1F
CIViC (Clinical Interpretations of Variants in Cancer)HTR1F
Cancer3DHTR1F
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182134   
Orphanet
DisGeNETHTR1F
MedgenHTR1F
Genetic Testing Registry HTR1F
NextProtP30939 [Medical]
GENETestsHTR1F
Target ValidationHTR1F
Huge Navigator HTR1F [HugePedia]
ClinGenHTR1F
Clinical trials, drugs, therapy
MyCancerGenomeHTR1F
Protein Interactions : CTDHTR1F
Pharm GKB GenePA29553
PharosP30939
Clinical trialHTR1F
Miscellaneous
canSAR (ICR)HTR1F
HarmonizomeHTR1F
ARCHS4HTR1F
DataMed IndexHTR1F
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHTR1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:56:10 CET 2022

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