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HTR3D (5-hydroxytryptamine receptor 3D)

Identity

Alias_names5-hydroxytryptamine (serotonin) receptor 3 family member D
5-hydroxytryptamine (serotonin) receptor 3D, ionotropic
Other alias5HT3D
HGNC (Hugo) HTR3D
LocusID (NCBI) 200909
Atlas_Id 64470
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184031742 and ends at 184039369 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSN (Xq12) / HTR3D (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTR3D   24004
Cards
Entrez_Gene (NCBI)HTR3D  200909  5-hydroxytryptamine receptor 3D
Aliases5HT3D
GeneCards (Weizmann)HTR3D
Ensembl hg19 (Hinxton)ENSG00000186090 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186090 [Gene_View]  chr3:184031742-184039369 [Contig_View]  HTR3D [Vega]
ICGC DataPortalENSG00000186090
TCGA cBioPortalHTR3D
AceView (NCBI)HTR3D
Genatlas (Paris)HTR3D
WikiGenes200909
SOURCE (Princeton)HTR3D
Genetics Home Reference (NIH)HTR3D
Genomic and cartography
GoldenPath hg38 (UCSC)HTR3D  -     chr3:184031742-184039369 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTR3D  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblHTR3D - 3q27.1 [CytoView hg19]  HTR3D - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIHTR3D [Mapview hg19]  HTR3D [Mapview hg38]
OMIM610122   
Gene and transcription
Genbank (Entrez)AJ437318 AY159812 BC101090 BC101091 BK001746
RefSeq transcript (Entrez)NM_001145143 NM_001163646 NM_182537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTR3D
Cluster EST : UnigeneHs.448004 [ NCBI ]
CGAP (NCI)Hs.448004
Alternative Splicing GalleryENSG00000186090
Gene ExpressionHTR3D [ NCBI-GEO ]   HTR3D [ EBI - ARRAY_EXPRESS ]   HTR3D [ SEEK ]   HTR3D [ MEM ]
Gene Expression Viewer (FireBrowse)HTR3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200909
GTEX Portal (Tissue expression)HTR3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70Z44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70Z44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70Z44
Splice isoforms : SwissVarQ70Z44
PhosPhoSitePlusQ70Z44
Domains : Interpro (EBI)Acetylcholine_rcpt_TM    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
Conserved Domain (NCBI)HTR3D
DMDM Disease mutations200909
Blocks (Seattle)HTR3D
SuperfamilyQ70Z44
Human Protein AtlasENSG00000186090
Peptide AtlasQ70Z44
HPRD17121
IPIIPI00429176   IPI00376256   IPI00877166   IPI01021547   IPI00939361   
Protein Interaction databases
DIP (DOE-UCLA)Q70Z44
IntAct (EBI)Q70Z44
FunCoupENSG00000186090
BioGRIDHTR3D
STRING (EMBL)HTR3D
ZODIACHTR3D
Ontologies - Pathways
QuickGOQ70Z44
Ontology : AmiGOprotein binding  plasma membrane  signal transduction  integral component of membrane  serotonin-gated cation-selective channel activity  ion transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  signal transduction  integral component of membrane  serotonin-gated cation-selective channel activity  ion transmembrane transport  cation transmembrane transport  
Pathways : KEGGSerotonergic synapse   
NDEx NetworkHTR3D
Atlas of Cancer Signalling NetworkHTR3D
Wikipedia pathwaysHTR3D
Orthology - Evolution
OrthoDB200909
GeneTree (enSembl)ENSG00000186090
Phylogenetic Trees/Animal Genes : TreeFamHTR3D
HOVERGENQ70Z44
HOGENOMQ70Z44
Homologs : HomoloGeneHTR3D
Homology/Alignments : Family Browser (UCSC)HTR3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTR3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTR3D
dbVarHTR3D
ClinVarHTR3D
1000_GenomesHTR3D 
Exome Variant ServerHTR3D
ExAC (Exome Aggregation Consortium)HTR3D (select the gene name)
Genetic variants : HAPMAP200909
Genomic Variants (DGV)HTR3D [DGVbeta]
DECIPHERHTR3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHTR3D 
Mutations
ICGC Data PortalHTR3D 
TCGA Data PortalHTR3D 
Broad Tumor PortalHTR3D
OASIS PortalHTR3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTR3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHTR3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)University of Heidelberg Serotonin receptor variant database
BioMutasearch HTR3D
DgiDB (Drug Gene Interaction Database)HTR3D
DoCM (Curated mutations)HTR3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTR3D (select a term)
intoGenHTR3D
Cancer3DHTR3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610122   
Orphanet
MedgenHTR3D
Genetic Testing Registry HTR3D
NextProtQ70Z44 [Medical]
TSGene200909
GENETestsHTR3D
Target ValidationHTR3D
Huge Navigator HTR3D [HugePedia]
snp3D : Map Gene to Disease200909
BioCentury BCIQHTR3D
ClinGenHTR3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200909
Chemical/Pharm GKB GenePA134866755
Clinical trialHTR3D
Miscellaneous
canSAR (ICR)HTR3D (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTR3D
EVEXHTR3D
GoPubMedHTR3D
iHOPHTR3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:00 CEST 2017

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