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HTR3E (5-hydroxytryptamine (serotonin) receptor 3E, ionotropic)

Identity

Alias_names5-hydroxytryptamine (serotonin) receptor 3, family member E
5-hydroxytryptamine (serotonin) receptor 3E, ionotropic
Other alias5-HT3-E
5-HT3E
5-HT3c1
HGNC (Hugo) HTR3E
LocusID (NCBI) 285242
Atlas_Id 64471
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 183814852 and ends at 183824783 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTR3E   24005
Cards
Entrez_Gene (NCBI)HTR3E  285242  5-hydroxytryptamine (serotonin) receptor 3E, ionotropic
Aliases5-HT3-E; 5-HT3E; 5-HT3c1
GeneCards (Weizmann)HTR3E
Ensembl hg19 (Hinxton)ENSG00000186038 [Gene_View]  chr3:183814852-183824783 [Contig_View]  HTR3E [Vega]
Ensembl hg38 (Hinxton)ENSG00000186038 [Gene_View]  chr3:183814852-183824783 [Contig_View]  HTR3E [Vega]
ICGC DataPortalENSG00000186038
TCGA cBioPortalHTR3E
AceView (NCBI)HTR3E
Genatlas (Paris)HTR3E
WikiGenes285242
SOURCE (Princeton)HTR3E
Genetics Home Reference (NIH)HTR3E
Genomic and cartography
GoldenPath hg19 (UCSC)HTR3E  -     chr3:183814852-183824783 +  3q27.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HTR3E  -     3q27.1   [Description]    (hg38-Dec_2013)
EnsemblHTR3E - 3q27.1 [CytoView hg19]  HTR3E - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIHTR3E [Mapview hg19]  HTR3E [Mapview hg38]
OMIM610123   
Gene and transcription
Genbank (Entrez)AY159813 AY349352 AY349353 BC101182 BC101183
RefSeq transcript (Entrez)NM_001256613 NM_001256614 NM_182589 NM_198313 NM_198314
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_012452 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)HTR3E
Cluster EST : UnigeneHs.449179 [ NCBI ]
CGAP (NCI)Hs.449179
Alternative Splicing GalleryENSG00000186038
Gene ExpressionHTR3E [ NCBI-GEO ]   HTR3E [ EBI - ARRAY_EXPRESS ]   HTR3E [ SEEK ]   HTR3E [ MEM ]
Gene Expression Viewer (FireBrowse)HTR3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285242
GTEX Portal (Tissue expression)HTR3E
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5X5Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5X5Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5X5Y0
Splice isoforms : SwissVarA5X5Y0
PhosPhoSitePlusA5X5Y0
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)Acetylcholine_rcpt_TM    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
Conserved Domain (NCBI)HTR3E
DMDM Disease mutations285242
Blocks (Seattle)HTR3E
SuperfamilyA5X5Y0
Human Protein AtlasENSG00000186038
Peptide AtlasA5X5Y0
HPRD17122
IPIIPI00877086   IPI00877063   IPI00376255   IPI00876853   IPI00925859   IPI00877142   
Protein Interaction databases
DIP (DOE-UCLA)A5X5Y0
IntAct (EBI)A5X5Y0
FunCoupENSG00000186038
BioGRIDHTR3E
STRING (EMBL)HTR3E
ZODIACHTR3E
Ontologies - Pathways
QuickGOA5X5Y0
Ontology : AmiGOserotonin receptor activity  extracellular ligand-gated ion channel activity  plasma membrane  serotonin receptor signaling pathway  integral component of membrane  ion transmembrane transport  transmembrane transport  
Ontology : EGO-EBIserotonin receptor activity  extracellular ligand-gated ion channel activity  plasma membrane  serotonin receptor signaling pathway  integral component of membrane  ion transmembrane transport  transmembrane transport  
Pathways : KEGGSerotonergic synapse   
NDEx NetworkHTR3E
Atlas of Cancer Signalling NetworkHTR3E
Wikipedia pathwaysHTR3E
Orthology - Evolution
OrthoDB285242
GeneTree (enSembl)ENSG00000186038
Phylogenetic Trees/Animal Genes : TreeFamHTR3E
HOVERGENA5X5Y0
HOGENOMA5X5Y0
Homologs : HomoloGeneHTR3E
Homology/Alignments : Family Browser (UCSC)HTR3E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHTR3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HTR3E
dbVarHTR3E
ClinVarHTR3E
1000_GenomesHTR3E 
Exome Variant ServerHTR3E
ExAC (Exome Aggregation Consortium)HTR3E (select the gene name)
Genetic variants : HAPMAP285242
Genomic Variants (DGV)HTR3E [DGVbeta]
DECIPHER (Syndromes)3:183814852-183824783  ENSG00000186038
CONAN: Copy Number AnalysisHTR3E 
Mutations
ICGC Data PortalHTR3E 
TCGA Data PortalHTR3E 
Broad Tumor PortalHTR3E
OASIS PortalHTR3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHTR3E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHTR3E
LOVD (Leiden Open Variation Database)University of Heidelberg Serotonin receptor variant database
BioMutasearch HTR3E
DgiDB (Drug Gene Interaction Database)HTR3E
DoCM (Curated mutations)HTR3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HTR3E (select a term)
intoGenHTR3E
Cancer3DHTR3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610123   
Orphanet
MedgenHTR3E
Genetic Testing Registry HTR3E
NextProtA5X5Y0 [Medical]
TSGene285242
GENETestsHTR3E
Huge Navigator HTR3E [HugePedia]
snp3D : Map Gene to Disease285242
BioCentury BCIQHTR3E
ClinGenHTR3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285242
Chemical/Pharm GKB GenePA134900226
Clinical trialHTR3E
Miscellaneous
canSAR (ICR)HTR3E (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTR3E
EVEXHTR3E
GoPubMedHTR3E
iHOPHTR3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:23 CET 2017

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