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HTR5A-AS1 (HTR5A antisense RNA 1)

Identity

Alias_namesHTR5AOS
HTR5A opposite strand
Other alias
HGNC (Hugo) HTR5A-AS1
LocusID (NCBI) 100128264
Atlas_Id 64473
Location 7q36.2  [Link to chromosome band 7q36]
Location_base_pair Starts at 155067069 and ends at 155071557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HTR5A-AS1   48956
Cards
Entrez_Gene (NCBI)HTR5A-AS1  100128264  HTR5A antisense RNA 1
AliasesHTR5AOS
GeneCards (Weizmann)HTR5A-AS1
Ensembl hg19 (Hinxton)ENSG00000220575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000220575 [Gene_View]  chr7:155067069-155071557 [Contig_View]  HTR5A-AS1 [Vega]
ICGC DataPortalENSG00000220575
TCGA cBioPortalHTR5A-AS1
AceView (NCBI)HTR5A-AS1
Genatlas (Paris)HTR5A-AS1
WikiGenes100128264
SOURCE (Princeton)HTR5A-AS1
Genetics Home Reference (NIH)HTR5A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HTR5A-AS1  -     chr7:155067069-155071557 -  7q36.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HTR5A-AS1  -     7q36.2   [Description]    (hg19-Feb_2009)
EnsemblHTR5A-AS1 - 7q36.2 [CytoView hg19]  HTR5A-AS1 - 7q36.2 [CytoView hg38]
Mapping of homologs : NCBIHTR5A-AS1 [Mapview hg19]  HTR5A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303289 BC031272 BC045795 DC407680
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HTR5A-AS1
Cluster EST : UnigeneHs.744621 [ NCBI ]
CGAP (NCI)Hs.744621
Alternative Splicing GalleryENSG00000220575
Gene ExpressionHTR5A-AS1 [ NCBI-GEO ]   HTR5A-AS1 [ EBI - ARRAY_EXPRESS ]   HTR5A-AS1 [ SEEK ]   HTR5A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HTR5A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100128264
GTEX Portal (Tissue expression)HTR5A-AS1
Human Protein AtlasENSG00000220575-HTR5A-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HTR5A-AS1
DMDM Disease mutations100128264
Blocks (Seattle)HTR5A-AS1
Human Protein Atlas [tissue]ENSG00000220575-HTR5A-AS1 [tissue]
IPIIPI00746422   
Protein Interaction databases
FunCoupENSG00000220575
BioGRIDHTR5A-AS1
STRING (EMBL)HTR5A-AS1
ZODIACHTR5A-AS1
Ontologies - Pathways
Huge Navigator HTR5A-AS1 [HugePedia]
snp3D : Map Gene to Disease100128264
BioCentury BCIQHTR5A-AS1
ClinGenHTR5A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128264
Clinical trialHTR5A-AS1
Miscellaneous
canSAR (ICR)HTR5A-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHTR5A-AS1
EVEXHTR5A-AS1
GoPubMedHTR5A-AS1
iHOPHTR5A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:33:33 CET 2017

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