Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HULC (hepatocellular carcinoma up-regulated long non-coding RNA)

Identity

Alias_nameshighly up-regulated in liver cancer long non-coding RNA
Alias_symbol (synonym)NCRNA00078
LINC00078
HCCAT1
Other alias
HGNC (Hugo) HULC
LocusID (NCBI) 728655
Atlas_Id 50001
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 8652209 and ends at 8653846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HULC   34232
Cards
Entrez_Gene (NCBI)HULC  728655  hepatocellular carcinoma up-regulated long non-coding RNA
AliasesHCCAT1; LINC00078; NCRNA00078
GeneCards (Weizmann)HULC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:8652209-8653846 [Contig_View]  HULC [Vega]
TCGA cBioPortalHULC
AceView (NCBI)HULC
Genatlas (Paris)HULC
WikiGenes728655
SOURCE (Princeton)HULC
Genetics Home Reference (NIH)HULC
Genomic and cartography
GoldenPath hg38 (UCSC)HULC  -     chr6:8652209-8653846 +  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HULC  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblHULC - 6p24.3 [CytoView hg19]  HULC - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBIHULC [Mapview hg19]  HULC [Mapview hg38]
OMIM612210   
Gene and transcription
Genbank (Entrez)AY914050 HG975403
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HULC
Cluster EST : UnigeneHs.214343 [ NCBI ]
CGAP (NCI)Hs.214343
Gene ExpressionHULC [ NCBI-GEO ]   HULC [ EBI - ARRAY_EXPRESS ]   HULC [ SEEK ]   HULC [ MEM ]
Gene Expression Viewer (FireBrowse)HULC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728655
GTEX Portal (Tissue expression)HULC
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HULC
DMDM Disease mutations728655
Blocks (Seattle)HULC
Protein Interaction databases
BioGRIDHULC
STRING (EMBL)HULC
ZODIACHULC
Ontologies - Pathways
Huge Navigator HULC [HugePedia]
snp3D : Map Gene to Disease728655
BioCentury BCIQHULC
ClinGenHULC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728655
Chemical/Pharm GKB GenePA162391891
Clinical trialHULC
Miscellaneous
canSAR (ICR)HULC (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHULC
EVEXHULC
GoPubMedHULC
iHOPHULC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:12:23 CET 2018

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