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HYDIN (HYDIN, axonemal central pair apparatus protein)

Identity

Other namesCILD5
HYDIN1
HYDIN2
PPP1R31
HGNC (Hugo) HYDIN
LocusID (NCBI) 54768
Atlas_Id 40906
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71065314 and ends at 71264625 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AARS (16q22.1) / HYDIN (16q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HYDIN   19368
Cards
Entrez_Gene (NCBI)HYDIN  54768  HYDIN, axonemal central pair apparatus protein
AliasesCILD5; HYDIN1; HYDIN2; PPP1R31
GeneCards (Weizmann)HYDIN
Ensembl hg19 (Hinxton)ENSG00000157423 [Gene_View]  chr16:71065314-71264625 [Contig_View]  HYDIN [Vega]
Ensembl hg38 (Hinxton)ENSG00000157423 [Gene_View]  chr16:71065314-71264625 [Contig_View]  HYDIN [Vega]
ICGC DataPortalENSG00000157423
TCGA cBioPortalHYDIN
AceView (NCBI)HYDIN
Genatlas (Paris)HYDIN
WikiGenes54768
SOURCE (Princeton)HYDIN
Genomic and cartography
GoldenPath hg19 (UCSC)HYDIN  -     chr16:71065314-71264625 -  16q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HYDIN  -     16q22.2   [Description]    (hg38-Dec_2013)
EnsemblHYDIN - 16q22.2 [CytoView hg19]  HYDIN - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBIHYDIN [Mapview hg19]  HYDIN [Mapview hg38]
OMIM608647   610812   
Gene and transcription
Genbank (Entrez)AK022933 AK026688 AK057467 AK074472 AK125886
RefSeq transcript (Entrez)NM_001198542 NM_001198543 NM_001270974 NM_017558 NM_032821
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_033116 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)HYDIN
Cluster EST : UnigeneHs.745353 [ NCBI ]
CGAP (NCI)Hs.745353
Alternative Splicing GalleryENSG00000157423
Gene ExpressionHYDIN [ NCBI-GEO ]   HYDIN [ EBI - ARRAY_EXPRESS ]   HYDIN [ SEEK ]   HYDIN [ MEM ]
Gene Expression Viewer (FireBrowse)HYDIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54768
GTEX Portal (Tissue expression)HYDIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0P3 (Uniprot)
NextProtQ4G0P3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0P3
Splice isoforms : SwissVarQ4G0P3 (Swissvar)
PhosPhoSitePlusQ4G0P3
Domains : Interpro (EBI)ASH    P-loop_NTPase    PapD-like   
Domain families : Pfam (Sanger)ASH (PF15780)   
Domain families : Pfam (NCBI)pfam15780   
DMDM Disease mutations54768
Blocks (Seattle)HYDIN
PDB (SRS)2E6J    2YS4   
PDB (PDBSum)2E6J    2YS4   
PDB (IMB)2E6J    2YS4   
PDB (RSDB)2E6J    2YS4   
Structural Biology KnowledgeBase2E6J    2YS4   
SCOP (Structural Classification of Proteins)2E6J    2YS4   
CATH (Classification of proteins structures)2E6J    2YS4   
SuperfamilyQ4G0P3
Human Protein AtlasENSG00000157423
Peptide AtlasQ4G0P3
HPRD11042
Protein Interaction databases
DIP (DOE-UCLA)Q4G0P3
IntAct (EBI)Q4G0P3
FunCoupENSG00000157423
BioGRIDHYDIN
STRING (EMBL)HYDIN
ZODIACHYDIN
Ontologies - Pathways
QuickGOQ4G0P3
Ontology : AmiGOepithelial cell development  cilium movement  ventricular system development  trachea development  axonemal central apparatus assembly  axonemal central pair projection  
Ontology : EGO-EBIepithelial cell development  cilium movement  ventricular system development  trachea development  axonemal central apparatus assembly  axonemal central pair projection  
NDEx NetworkHYDIN
Atlas of Cancer Signalling NetworkHYDIN
Wikipedia pathwaysHYDIN
Orthology - Evolution
OrthoDB54768
GeneTree (enSembl)ENSG00000157423
Phylogenetic Trees/Animal Genes : TreeFamHYDIN
Homologs : HomoloGeneHYDIN
Homology/Alignments : Family Browser (UCSC)HYDIN
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHYDIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HYDIN
dbVarHYDIN
ClinVarHYDIN
1000_GenomesHYDIN 
Exome Variant ServerHYDIN
ExAC (Exome Aggregation Consortium)HYDIN (select the gene name)
Genetic variants : HAPMAP54768
Genomic Variants (DGV)HYDIN [DGVbeta]
Mutations
ICGC Data PortalHYDIN 
TCGA Data PortalHYDIN 
Broad Tumor PortalHYDIN
OASIS PortalHYDIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHYDIN 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HYDIN
DgiDB (Drug Gene Interaction Database)HYDIN
DoCM (Curated mutations)HYDIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HYDIN (select a term)
intoGenHYDIN
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:71065314-71264625  ENSG00000157423
CONAN: Copy Number AnalysisHYDIN 
Mutations and Diseases : HGMDHYDIN
OMIM608647    610812   
MedgenHYDIN
Genetic Testing Registry HYDIN
NextProtQ4G0P3 [Medical]
TSGene54768
GENETestsHYDIN
Huge Navigator HYDIN [HugePedia]
snp3D : Map Gene to Disease54768
BioCentury BCIQHYDIN
ClinGenHYDIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54768
Chemical/Pharm GKB GenePA134866950
Clinical trialHYDIN
Miscellaneous
canSAR (ICR)HYDIN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHYDIN
EVEXHYDIN
GoPubMedHYDIN
iHOPHYDIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:54:05 CEST 2016

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