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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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HYI (hydroxypyruvate isomerase (putative))

Identity

Other namesHT036
HGNC (Hugo) HYI
LocusID (NCBI) 81888
Location 1p34.2
Location_base_pair Starts at 43916674 and ends at 43919660 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HYI   26948
Cards
Entrez_Gene (NCBI)HYI  81888  hydroxypyruvate isomerase (putative)
GeneCards (Weizmann)HYI
Ensembl hg19 (Hinxton)ENSG00000178922 [Gene_View]  chr1:43916674-43919660 [Contig_View]  HYI [Vega]
Ensembl hg38 (Hinxton)ENSG00000178922 [Gene_View]  chr1:43916674-43919660 [Contig_View]  HYI [Vega]
ICGC DataPortalENSG00000178922
cBioPortalHYI
AceView (NCBI)HYI
Genatlas (Paris)HYI
WikiGenes81888
SOURCE (Princeton)HYI
Genomic and cartography
GoldenPath hg19 (UCSC)HYI  -     chr1:43916674-43919660 -  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HYI  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblHYI - 1p34.2 [CytoView hg19]  HYI - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIHYI [Mapview hg19]  HYI [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF284750 AF284751 AI023272 AK096244 AY037165
RefSeq transcript (Entrez)NM_001190880 NM_001243526 NM_031207
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_029091 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)HYI
Cluster EST : UnigeneHs.709864 [ NCBI ]
CGAP (NCI)Hs.709864
Alternative Splicing : Fast-db (Paris)GSHG0002040
Alternative Splicing GalleryENSG00000178922
Gene ExpressionHYI [ NCBI-GEO ]     HYI [ SEEK ]   HYI [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T013 (Uniprot)
NextProtQ5T013  [Medical]
With graphics : InterProQ5T013
Splice isoforms : SwissVarQ5T013 (Swissvar)
Catalytic activity : Enzyme5.3.1.22 [ Enzyme-Expasy ]   5.3.1.225.3.1.22 [ IntEnz-EBI ]   5.3.1.22 [ BRENDA ]   5.3.1.22 [ KEGG ]   
Domains : Interpro (EBI)HyI-like    Xyl_isomerase-like_TIM-brl   
Related proteins : CluSTrQ5T013
Domain families : Pfam (Sanger)AP_endonuc_2 (PF01261)   
Domain families : Pfam (NCBI)pfam01261   
DMDM Disease mutations81888
Blocks (Seattle)Q5T013
Human Protein AtlasENSG00000178922
Peptide AtlasQ5T013
HPRD11039
IPIIPI00848045   IPI00847938   IPI00382748   IPI00465271   IPI00514542   IPI00514834   IPI00647220   IPI00982934   IPI00978535   
Protein Interaction databases
DIP (DOE-UCLA)Q5T013
IntAct (EBI)Q5T013
FunCoupENSG00000178922
BioGRIDHYI
IntegromeDBHYI
STRING (EMBL)HYI
Ontologies - Pathways
QuickGOQ5T013
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  metabolic process  hydroxypyruvate isomerase activity  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  metabolic process  hydroxypyruvate isomerase activity  
Pathways : KEGGGlyoxylate and dicarboxylate metabolism   
Protein Interaction DatabaseHYI
DoCM (Curated mutations)HYI
Wikipedia pathwaysHYI
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHYI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HYI
dbVarHYI
ClinVarHYI
1000_GenomesHYI 
Exome Variant ServerHYI
SNP (GeneSNP Utah)HYI
SNP : HGBaseHYI
Genetic variants : HAPMAPHYI
Genomic Variants (DGV)HYI [DGVbeta]
Mutations
ICGC Data PortalENSG00000178922 
Somatic Mutations in Cancer : COSMICHYI 
CONAN: Copy Number AnalysisHYI 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:43916674-43919660
Mutations and Diseases : HGMDHYI
OMIM
MedgenHYI
NextProtQ5T013 [Medical]
GENETestsHYI
Disease Genetic AssociationHYI
Huge Navigator HYI [HugePedia]  HYI [HugeCancerGEM]
snp3D : Map Gene to Disease81888
DGIdb (Drug Gene Interaction db)HYI
General knowledge
Homologs : HomoloGeneHYI
Homology/Alignments : Family Browser (UCSC)HYI
Phylogenetic Trees/Animal Genes : TreeFamHYI
Chemical/Protein Interactions : CTD81888
Chemical/Pharm GKB GenePA142671668
Clinical trialHYI
Cancer Resource (Charite)ENSG00000178922
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineHYI
GoPubMedHYI
iHOPHYI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:39:43 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.