Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HYKK (hydroxylysine kinase)

Identity

Alias_namesAGPHD1
aminoglycoside phosphotransferase domain containing 1
Alias_symbol (synonym)LOC123688
Other alias
HGNC (Hugo) HYKK
LocusID (NCBI) 123688
Atlas_Id 53458
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78799906 and ends at 78826012 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HYKK   34403
Cards
Entrez_Gene (NCBI)HYKK  123688  hydroxylysine kinase
AliasesAGPHD1
GeneCards (Weizmann)HYKK
Ensembl hg19 (Hinxton)ENSG00000188266 [Gene_View]  chr15:78799906-78826012 [Contig_View]  HYKK [Vega]
Ensembl hg38 (Hinxton)ENSG00000188266 [Gene_View]  chr15:78799906-78826012 [Contig_View]  HYKK [Vega]
ICGC DataPortalENSG00000188266
TCGA cBioPortalHYKK
AceView (NCBI)HYKK
Genatlas (Paris)HYKK
WikiGenes123688
SOURCE (Princeton)HYKK
Genetics Home Reference (NIH)HYKK
Genomic and cartography
GoldenPath hg19 (UCSC)HYKK  -     chr15:78799906-78826012 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HYKK  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblHYKK - 15q25.1 [CytoView hg19]  HYKK - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIHYKK [Mapview hg19]  HYKK [Mapview hg38]
OMIM614681   
Gene and transcription
Genbank (Entrez)AK126453 AW327432 BC132753 BC144383 BM045979
RefSeq transcript (Entrez)NM_001013619 NM_001083612
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)HYKK
Cluster EST : UnigeneHs.663491 [ NCBI ]
CGAP (NCI)Hs.663491
Alternative Splicing GalleryENSG00000188266
Gene ExpressionHYKK [ NCBI-GEO ]   HYKK [ EBI - ARRAY_EXPRESS ]   HYKK [ SEEK ]   HYKK [ MEM ]
Gene Expression Viewer (FireBrowse)HYKK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123688
GTEX Portal (Tissue expression)HYKK
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RU49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RU49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RU49
Splice isoforms : SwissVarA2RU49
Catalytic activity : Enzyme2.7.1.81 [ Enzyme-Expasy ]   2.7.1.812.7.1.81 [ IntEnz-EBI ]   2.7.1.81 [ BRENDA ]   2.7.1.81 [ KEGG ]   
PhosPhoSitePlusA2RU49
Domains : Interpro (EBI)Aminoglycoside_PTrfase    Kinase-like_dom   
Domain families : Pfam (Sanger)APH (PF01636)   
Domain families : Pfam (NCBI)pfam01636   
Conserved Domain (NCBI)HYKK
DMDM Disease mutations123688
Blocks (Seattle)HYKK
SuperfamilyA2RU49
Human Protein AtlasENSG00000188266
Peptide AtlasA2RU49
HPRD12515
IPIIPI00783749   IPI00884281   IPI00418966   IPI01026154   
Protein Interaction databases
DIP (DOE-UCLA)A2RU49
IntAct (EBI)A2RU49
FunCoupENSG00000188266
BioGRIDHYKK
STRING (EMBL)HYKK
ZODIACHYKK
Ontologies - Pathways
QuickGOA2RU49
Ontology : AmiGOmitochondrial matrix  lysine catabolic process  phosphorylation  hydroxylysine kinase activity  
Ontology : EGO-EBImitochondrial matrix  lysine catabolic process  phosphorylation  hydroxylysine kinase activity  
NDEx NetworkHYKK
Atlas of Cancer Signalling NetworkHYKK
Wikipedia pathwaysHYKK
Orthology - Evolution
OrthoDB123688
GeneTree (enSembl)ENSG00000188266
Phylogenetic Trees/Animal Genes : TreeFamHYKK
HOVERGENA2RU49
HOGENOMA2RU49
Homologs : HomoloGeneHYKK
Homology/Alignments : Family Browser (UCSC)HYKK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHYKK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HYKK
dbVarHYKK
ClinVarHYKK
1000_GenomesHYKK 
Exome Variant ServerHYKK
ExAC (Exome Aggregation Consortium)HYKK (select the gene name)
Genetic variants : HAPMAP123688
Genomic Variants (DGV)HYKK [DGVbeta]
DECIPHER (Syndromes)15:78799906-78826012  ENSG00000188266
CONAN: Copy Number AnalysisHYKK 
Mutations
ICGC Data PortalHYKK 
TCGA Data PortalHYKK 
Broad Tumor PortalHYKK
OASIS PortalHYKK [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHYKK
BioMutasearch HYKK
DgiDB (Drug Gene Interaction Database)HYKK
DoCM (Curated mutations)HYKK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HYKK (select a term)
intoGenHYKK
Cancer3DHYKK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614681   
Orphanet
MedgenHYKK
Genetic Testing Registry HYKK
NextProtA2RU49 [Medical]
TSGene123688
GENETestsHYKK
Huge Navigator HYKK [HugePedia]
snp3D : Map Gene to Disease123688
BioCentury BCIQHYKK
ClinGenHYKK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123688
Chemical/Pharm GKB GenePA165478483
Clinical trialHYKK
Miscellaneous
canSAR (ICR)HYKK (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHYKK
EVEXHYKK
GoPubMedHYKK
iHOPHYKK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:10:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.