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HYLS1 (HYLS1, centriolar and ciliogenesis associated)

Identity

Alias_nameshydrolethalus syndrome 1
Alias_symbol (synonym)FLJ32915
Other aliasHLS
HGNC (Hugo) HYLS1
LocusID (NCBI) 219844
Atlas_Id 64480
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125887060 and ends at 125900646 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HYLS1   26558
Cards
Entrez_Gene (NCBI)HYLS1  219844  HYLS1, centriolar and ciliogenesis associated
AliasesHLS
GeneCards (Weizmann)HYLS1
Ensembl hg19 (Hinxton)ENSG00000198331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198331 [Gene_View]  chr11:125887060-125900646 [Contig_View]  HYLS1 [Vega]
ICGC DataPortalENSG00000198331
TCGA cBioPortalHYLS1
AceView (NCBI)HYLS1
Genatlas (Paris)HYLS1
WikiGenes219844
SOURCE (Princeton)HYLS1
Genetics Home Reference (NIH)HYLS1
Genomic and cartography
GoldenPath hg38 (UCSC)HYLS1  -     chr11:125887060-125900646 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HYLS1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblHYLS1 - 11q24.2 [CytoView hg19]  HYLS1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIHYLS1 [Mapview hg19]  HYLS1 [Mapview hg38]
OMIM236680   610693   
Gene and transcription
Genbank (Entrez)AK057477 AK127394 BC015047 BM970011 HQ447423
RefSeq transcript (Entrez)NM_001134793 NM_145014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HYLS1
Cluster EST : UnigeneHs.98133 [ NCBI ]
CGAP (NCI)Hs.98133
Alternative Splicing GalleryENSG00000198331
Gene ExpressionHYLS1 [ NCBI-GEO ]   HYLS1 [ EBI - ARRAY_EXPRESS ]   HYLS1 [ SEEK ]   HYLS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HYLS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219844
GTEX Portal (Tissue expression)HYLS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M11
Splice isoforms : SwissVarQ96M11
PhosPhoSitePlusQ96M11
Domains : Interpro (EBI)HYLS1    HYLS1_C_dom   
Domain families : Pfam (Sanger)HYLS1_C (PF15311)   
Domain families : Pfam (NCBI)pfam15311   
Conserved Domain (NCBI)HYLS1
DMDM Disease mutations219844
Blocks (Seattle)HYLS1
SuperfamilyQ96M11
Human Protein AtlasENSG00000198331
Peptide AtlasQ96M11
HPRD08148
IPIIPI00065180   
Protein Interaction databases
DIP (DOE-UCLA)Q96M11
IntAct (EBI)Q96M11
FunCoupENSG00000198331
BioGRIDHYLS1
STRING (EMBL)HYLS1
ZODIACHYLS1
Ontologies - Pathways
QuickGOQ96M11
Ontology : AmiGOprotein binding  nucleus  cytoplasm  centrosome  cytosol  plasma membrane  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  centrosome  cytosol  plasma membrane  
NDEx NetworkHYLS1
Atlas of Cancer Signalling NetworkHYLS1
Wikipedia pathwaysHYLS1
Orthology - Evolution
OrthoDB219844
GeneTree (enSembl)ENSG00000198331
Phylogenetic Trees/Animal Genes : TreeFamHYLS1
HOVERGENQ96M11
HOGENOMQ96M11
Homologs : HomoloGeneHYLS1
Homology/Alignments : Family Browser (UCSC)HYLS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHYLS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HYLS1
dbVarHYLS1
ClinVarHYLS1
1000_GenomesHYLS1 
Exome Variant ServerHYLS1
ExAC (Exome Aggregation Consortium)HYLS1 (select the gene name)
Genetic variants : HAPMAP219844
Genomic Variants (DGV)HYLS1 [DGVbeta]
DECIPHERHYLS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHYLS1 
Mutations
ICGC Data PortalHYLS1 
TCGA Data PortalHYLS1 
Broad Tumor PortalHYLS1
OASIS PortalHYLS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHYLS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHYLS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HYLS1
DgiDB (Drug Gene Interaction Database)HYLS1
DoCM (Curated mutations)HYLS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HYLS1 (select a term)
intoGenHYLS1
Cancer3DHYLS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM236680    610693   
Orphanet1022    2075   
MedgenHYLS1
Genetic Testing Registry HYLS1
NextProtQ96M11 [Medical]
TSGene219844
GENETestsHYLS1
Target ValidationHYLS1
Huge Navigator HYLS1 [HugePedia]
snp3D : Map Gene to Disease219844
BioCentury BCIQHYLS1
ClinGenHYLS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219844
Chemical/Pharm GKB GenePA142671669
Clinical trialHYLS1
Miscellaneous
canSAR (ICR)HYLS1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHYLS1
EVEXHYLS1
GoPubMedHYLS1
iHOPHYLS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:55 CEST 2017

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