Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HYPM (huntingtin interacting protein M)

Identity

Alias_namesCXorf27
chromosome X open reading frame 27
Alias_symbol (synonym)HIP17
Other alias
HGNC (Hugo) HYPM
LocusID (NCBI) 25763
Atlas_Id 64483
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 37850070 and ends at 37850570 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HYPM   18417
Cards
Entrez_Gene (NCBI)HYPM  25763  huntingtin interacting protein M
AliasesCXorf27; HIP17
GeneCards (Weizmann)HYPM
Ensembl hg19 (Hinxton)ENSG00000187516 [Gene_View]  chrX:37850070-37850570 [Contig_View]  HYPM [Vega]
Ensembl hg38 (Hinxton)ENSG00000187516 [Gene_View]  chrX:37850070-37850570 [Contig_View]  HYPM [Vega]
ICGC DataPortalENSG00000187516
TCGA cBioPortalHYPM
AceView (NCBI)HYPM
Genatlas (Paris)HYPM
WikiGenes25763
SOURCE (Princeton)HYPM
Genetics Home Reference (NIH)HYPM
Genomic and cartography
GoldenPath hg19 (UCSC)HYPM  -     chrX:37850070-37850570 +  Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HYPM  -     Xp11.4   [Description]    (hg38-Dec_2013)
EnsemblHYPM - Xp11.4 [CytoView hg19]  HYPM - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBIHYPM [Mapview hg19]  HYPM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF049615 AW291697 BC104428 BC104429 BC113024
RefSeq transcript (Entrez)NM_012274
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021354 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)HYPM
Cluster EST : UnigeneHs.122959 [ NCBI ]
CGAP (NCI)Hs.122959
Alternative Splicing GalleryENSG00000187516
Gene ExpressionHYPM [ NCBI-GEO ]   HYPM [ EBI - ARRAY_EXPRESS ]   HYPM [ SEEK ]   HYPM [ MEM ]
Gene Expression Viewer (FireBrowse)HYPM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25763
GTEX Portal (Tissue expression)HYPM
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75409   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75409  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75409
Splice isoforms : SwissVarO75409
PhosPhoSitePlusO75409
Domains : Interpro (EBI)Histone-fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HYPM
DMDM Disease mutations25763
Blocks (Seattle)HYPM
SuperfamilyO75409
Human Protein AtlasENSG00000187516
Peptide AtlasO75409
IPIIPI00016121   
Protein Interaction databases
DIP (DOE-UCLA)O75409
IntAct (EBI)O75409
FunCoupENSG00000187516
BioGRIDHYPM
STRING (EMBL)HYPM
ZODIACHYPM
Ontologies - Pathways
QuickGOO75409
Ontology : AmiGOprotein binding  protein heterodimerization activity  
Ontology : EGO-EBIprotein binding  protein heterodimerization activity  
NDEx NetworkHYPM
Atlas of Cancer Signalling NetworkHYPM
Wikipedia pathwaysHYPM
Orthology - Evolution
OrthoDB25763
GeneTree (enSembl)ENSG00000187516
Phylogenetic Trees/Animal Genes : TreeFamHYPM
HOVERGENO75409
HOGENOMO75409
Homologs : HomoloGeneHYPM
Homology/Alignments : Family Browser (UCSC)HYPM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHYPM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HYPM
dbVarHYPM
ClinVarHYPM
1000_GenomesHYPM 
Exome Variant ServerHYPM
ExAC (Exome Aggregation Consortium)HYPM (select the gene name)
Genetic variants : HAPMAP25763
Genomic Variants (DGV)HYPM [DGVbeta]
DECIPHER (Syndromes)X:37850070-37850570  ENSG00000187516
CONAN: Copy Number AnalysisHYPM 
Mutations
ICGC Data PortalHYPM 
TCGA Data PortalHYPM 
Broad Tumor PortalHYPM
OASIS PortalHYPM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHYPM
BioMutasearch HYPM
DgiDB (Drug Gene Interaction Database)HYPM
DoCM (Curated mutations)HYPM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HYPM (select a term)
intoGenHYPM
Cancer3DHYPM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHYPM
Genetic Testing Registry HYPM
NextProtO75409 [Medical]
TSGene25763
GENETestsHYPM
Huge Navigator HYPM [HugePedia]
snp3D : Map Gene to Disease25763
BioCentury BCIQHYPM
ClinGenHYPM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25763
Chemical/Pharm GKB GenePA134943086
Clinical trialHYPM
Miscellaneous
canSAR (ICR)HYPM (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHYPM
EVEXHYPM
GoPubMedHYPM
iHOPHYPM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:26 CET 2017

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