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IATPR (ITGB1 adjacent tumor promoting lncRNA)

Identity

Alias (NCBI)TCONS_00018476
linc-ITGB1
HGNC (Hugo) IATPR
HGNC Alias symbTCONS_00018476
linc-ITGB1
LocusID (NCBI) 101929447
Atlas_Id 57618
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 33074026 and ends at 33116807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)IATPR   53719
Cards
Entrez_Gene (NCBI)IATPR    ITGB1 adjacent tumor promoting lncRNA
AliasesTCONS_00018476; linc-ITGB1
GeneCards (Weizmann)IATPR
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:33074026-33116807 [Contig_View]  IATPR [Vega]
TCGA cBioPortalIATPR
AceView (NCBI)IATPR
Genatlas (Paris)IATPR
SOURCE (Princeton)IATPR
Genetics Home Reference (NIH)IATPR
Genomic and cartography
GoldenPath hg38 (UCSC)IATPR  -     chr10:33074026-33116807 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IATPR  -     10p11.22   [Description]    (hg19-Feb_2009)
GoldenPathIATPR - 10p11.22 [CytoView hg19]  IATPR - 10p11.22 [CytoView hg38]
Genome Data Viewer NCBIIATPR [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)IATPR
Gene ExpressionIATPR [ NCBI-GEO ]   IATPR [ EBI - ARRAY_EXPRESS ]   IATPR [ SEEK ]   IATPR [ MEM ]
Gene Expression Viewer (FireBrowse)IATPR [ Firebrowse - Broad ]
GenevisibleExpression of IATPR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929447
GTEX Portal (Tissue expression)IATPR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IATPR
Protein Interaction databases
BioGRIDIATPR
STRING (EMBL)IATPR
ZODIACIATPR
Ontologies - Pathways
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIATPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:16 CEST 2021

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