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IBA57 (IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae))

Identity

Alias_namesC1orf69
chromosome 1 open reading frame 69
IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ12734
Other aliasMMDS3
HGNC (Hugo) IBA57
LocusID (NCBI) 200205
Atlas_Id 64487
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228353429 and ends at 228369958 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IBA57 (1q42.13) / IBA57 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IBA57   27302
Cards
Entrez_Gene (NCBI)IBA57  200205  IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)
AliasesC1orf69; MMDS3
GeneCards (Weizmann)IBA57
Ensembl hg19 (Hinxton)ENSG00000181873 [Gene_View]  chr1:228353429-228369958 [Contig_View]  IBA57 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181873 [Gene_View]  chr1:228353429-228369958 [Contig_View]  IBA57 [Vega]
ICGC DataPortalENSG00000181873
TCGA cBioPortalIBA57
AceView (NCBI)IBA57
Genatlas (Paris)IBA57
WikiGenes200205
SOURCE (Princeton)IBA57
Genetics Home Reference (NIH)IBA57
Genomic and cartography
GoldenPath hg19 (UCSC)IBA57  -     chr1:228353429-228369958 +  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IBA57  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblIBA57 - 1q42.13 [CytoView hg19]  IBA57 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIIBA57 [Mapview hg19]  IBA57 [Mapview hg38]
OMIM615316   615330   
Gene and transcription
Genbank (Entrez)AK022796 AK023911 AK303837 BC028052 BI820993
RefSeq transcript (Entrez)NM_001010867
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)IBA57
Cluster EST : UnigeneHs.636881 [ NCBI ]
CGAP (NCI)Hs.636881
Alternative Splicing GalleryENSG00000181873
Gene ExpressionIBA57 [ NCBI-GEO ]   IBA57 [ EBI - ARRAY_EXPRESS ]   IBA57 [ SEEK ]   IBA57 [ MEM ]
Gene Expression Viewer (FireBrowse)IBA57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200205
GTEX Portal (Tissue expression)IBA57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T440   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T440  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T440
Splice isoforms : SwissVarQ5T440
Catalytic activity : Enzyme2.1.-.- [ Enzyme-Expasy ]   2.1.-.-2.1.-.- [ IntEnz-EBI ]   2.1.-.- [ BRENDA ]   2.1.-.- [ KEGG ]   
PhosPhoSitePlusQ5T440
Domains : Interpro (EBI)GCV_T_C    GCV_T_N    YgfZ/GcvT_CS   
Domain families : Pfam (Sanger)GCV_T (PF01571)    GCV_T_C (PF08669)   
Domain families : Pfam (NCBI)pfam01571    pfam08669   
Conserved Domain (NCBI)IBA57
DMDM Disease mutations200205
Blocks (Seattle)IBA57
SuperfamilyQ5T440
Human Protein AtlasENSG00000181873
Peptide AtlasQ5T440
HPRD17318
IPIIPI00145260   IPI01009319   
Protein Interaction databases
DIP (DOE-UCLA)Q5T440
IntAct (EBI)Q5T440
FunCoupENSG00000181873
BioGRIDIBA57
STRING (EMBL)IBA57
ZODIACIBA57
Ontologies - Pathways
QuickGOQ5T440
Ontology : AmiGOmitochondrial matrix  heme biosynthetic process  iron-sulfur cluster assembly  transferase activity  poly(A) RNA binding  
Ontology : EGO-EBImitochondrial matrix  heme biosynthetic process  iron-sulfur cluster assembly  transferase activity  poly(A) RNA binding  
NDEx NetworkIBA57
Atlas of Cancer Signalling NetworkIBA57
Wikipedia pathwaysIBA57
Orthology - Evolution
OrthoDB200205
GeneTree (enSembl)ENSG00000181873
Phylogenetic Trees/Animal Genes : TreeFamIBA57
HOVERGENQ5T440
HOGENOMQ5T440
Homologs : HomoloGeneIBA57
Homology/Alignments : Family Browser (UCSC)IBA57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIBA57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IBA57
dbVarIBA57
ClinVarIBA57
1000_GenomesIBA57 
Exome Variant ServerIBA57
ExAC (Exome Aggregation Consortium)IBA57 (select the gene name)
Genetic variants : HAPMAP200205
Genomic Variants (DGV)IBA57 [DGVbeta]
DECIPHER (Syndromes)1:228353429-228369958  ENSG00000181873
CONAN: Copy Number AnalysisIBA57 
Mutations
ICGC Data PortalIBA57 
TCGA Data PortalIBA57 
Broad Tumor PortalIBA57
OASIS PortalIBA57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIBA57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIBA57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch IBA57
DgiDB (Drug Gene Interaction Database)IBA57
DoCM (Curated mutations)IBA57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IBA57 (select a term)
intoGenIBA57
Cancer3DIBA57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615316    615330   
Orphanet22301   
MedgenIBA57
Genetic Testing Registry IBA57
NextProtQ5T440 [Medical]
TSGene200205
GENETestsIBA57
Huge Navigator IBA57 [HugePedia]
snp3D : Map Gene to Disease200205
BioCentury BCIQIBA57
ClinGenIBA57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200205
Chemical/Pharm GKB GenePA142672519
Clinical trialIBA57
Miscellaneous
canSAR (ICR)IBA57 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIBA57
EVEXIBA57
GoPubMedIBA57
iHOPIBA57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:27 CET 2017

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