Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IBSP (integrin binding sialoprotein)

Identity

Alias_symbol (synonym)BSP
SP-II
BSP-II
Other aliasBNSP
HGNC (Hugo) IBSP
LocusID (NCBI) 3381
Atlas_Id 40908
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 88720702 and ends at 88733601 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF3D (22q12.3) / IBSP (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IBSP   5341
Cards
Entrez_Gene (NCBI)IBSP  3381  integrin binding sialoprotein
AliasesBNSP; BSP; BSP-II; SP-II
GeneCards (Weizmann)IBSP
Ensembl hg19 (Hinxton)ENSG00000029559 [Gene_View]  chr4:88720702-88733601 [Contig_View]  IBSP [Vega]
Ensembl hg38 (Hinxton)ENSG00000029559 [Gene_View]  chr4:88720702-88733601 [Contig_View]  IBSP [Vega]
ICGC DataPortalENSG00000029559
TCGA cBioPortalIBSP
AceView (NCBI)IBSP
Genatlas (Paris)IBSP
WikiGenes3381
SOURCE (Princeton)IBSP
Genetics Home Reference (NIH)IBSP
Genomic and cartography
GoldenPath hg19 (UCSC)IBSP  -     chr4:88720702-88733601 +  4q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IBSP  -     4q22.1   [Description]    (hg38-Dec_2013)
EnsemblIBSP - 4q22.1 [CytoView hg19]  IBSP - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIIBSP [Mapview hg19]  IBSP [Mapview hg38]
OMIM147563   
Gene and transcription
Genbank (Entrez)AA452255 AI751848 BC111920 BQ573754 DV462680
RefSeq transcript (Entrez)NM_004967
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)IBSP
Cluster EST : UnigeneHs.518726 [ NCBI ]
CGAP (NCI)Hs.518726
Alternative Splicing GalleryENSG00000029559
Gene ExpressionIBSP [ NCBI-GEO ]   IBSP [ EBI - ARRAY_EXPRESS ]   IBSP [ SEEK ]   IBSP [ MEM ]
Gene Expression Viewer (FireBrowse)IBSP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3381
GTEX Portal (Tissue expression)IBSP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21815   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP21815  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP21815
Splice isoforms : SwissVarP21815
PhosPhoSitePlusP21815
Domains : Interpro (EBI)BSP_II   
Domain families : Pfam (Sanger)BSP_II (PF05432)   
Domain families : Pfam (NCBI)pfam05432   
Conserved Domain (NCBI)IBSP
DMDM Disease mutations3381
Blocks (Seattle)IBSP
SuperfamilyP21815
Human Protein AtlasENSG00000029559
Peptide AtlasP21815
HPRD00951
IPIIPI00294662   
Protein Interaction databases
DIP (DOE-UCLA)P21815
IntAct (EBI)P21815
FunCoupENSG00000029559
BioGRIDIBSP
STRING (EMBL)IBSP
ZODIACIBSP
Ontologies - Pathways
QuickGOP21815
Ontology : AmiGOosteoblast differentiation  molecular_function  extracellular region  extracellular space  cell adhesion  membrane  extracellular matrix organization  extracellular matrix organization  bone mineralization  extracellular matrix  membrane-bounded vesicle  cellular response to growth factor stimulus  
Ontology : EGO-EBIosteoblast differentiation  molecular_function  extracellular region  extracellular space  cell adhesion  membrane  extracellular matrix organization  extracellular matrix organization  bone mineralization  extracellular matrix  membrane-bounded vesicle  cellular response to growth factor stimulus  
Pathways : BIOCARTARegulators of Bone Mineralization [Genes]   
Pathways : KEGGPI3K-Akt signaling pathway    Focal adhesion    ECM-receptor interaction   
NDEx NetworkIBSP
Atlas of Cancer Signalling NetworkIBSP
Wikipedia pathwaysIBSP
Orthology - Evolution
OrthoDB3381
GeneTree (enSembl)ENSG00000029559
Phylogenetic Trees/Animal Genes : TreeFamIBSP
HOVERGENP21815
HOGENOMP21815
Homologs : HomoloGeneIBSP
Homology/Alignments : Family Browser (UCSC)IBSP
Gene fusions - Rearrangements
Fusion Cancer (Beijing)EIF3D [22q12.3]  -  IBSP [4q22.1]  [FUSC002268]  [FUSC002268]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIBSP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IBSP
dbVarIBSP
ClinVarIBSP
1000_GenomesIBSP 
Exome Variant ServerIBSP
ExAC (Exome Aggregation Consortium)IBSP (select the gene name)
Genetic variants : HAPMAP3381
Genomic Variants (DGV)IBSP [DGVbeta]
DECIPHER (Syndromes)4:88720702-88733601  ENSG00000029559
CONAN: Copy Number AnalysisIBSP 
Mutations
ICGC Data PortalIBSP 
TCGA Data PortalIBSP 
Broad Tumor PortalIBSP
OASIS PortalIBSP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIBSP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIBSP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IBSP
DgiDB (Drug Gene Interaction Database)IBSP
DoCM (Curated mutations)IBSP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IBSP (select a term)
intoGenIBSP
Cancer3DIBSP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147563   
Orphanet
MedgenIBSP
Genetic Testing Registry IBSP
NextProtP21815 [Medical]
TSGene3381
GENETestsIBSP
Huge Navigator IBSP [HugePedia]
snp3D : Map Gene to Disease3381
BioCentury BCIQIBSP
ClinGenIBSP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3381
Chemical/Pharm GKB GenePA29590
Clinical trialIBSP
Miscellaneous
canSAR (ICR)IBSP (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIBSP
EVEXIBSP
GoPubMedIBSP
iHOPIBSP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:04:36 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.