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ICAM4 (intercellular adhesion molecule 4 (Landsteiner-Wiener blood group))

Identity

Alias_namesLW
intercellular adhesion molecule 4, Landsteiner-Wiener blood group
Landsteiner-Wiener blood group
intercellular adhesion molecule 4 (LW blood group)
Alias_symbol (synonym)CD242
Other alias
HGNC (Hugo) ICAM4
LocusID (NCBI) 3386
Atlas_Id 46763
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10286967 and ends at 10288584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ICAM4   5347
LRG (Locus Reference Genomic)LRG_809
Cards
Entrez_Gene (NCBI)ICAM4  3386  intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)
AliasesCD242; LW
GeneCards (Weizmann)ICAM4
Ensembl hg19 (Hinxton)ENSG00000105371 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105371 [Gene_View]  chr19:10286967-10288584 [Contig_View]  ICAM4 [Vega]
ICGC DataPortalENSG00000105371
TCGA cBioPortalICAM4
AceView (NCBI)ICAM4
Genatlas (Paris)ICAM4
WikiGenes3386
SOURCE (Princeton)ICAM4
Genetics Home Reference (NIH)ICAM4
Genomic and cartography
GoldenPath hg38 (UCSC)ICAM4  -     chr19:10286967-10288584 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ICAM4  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblICAM4 - 19p13.2 [CytoView hg19]  ICAM4 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIICAM4 [Mapview hg19]  ICAM4 [Mapview hg38]
OMIM111250   614088   
Gene and transcription
Genbank (Entrez)AH004780 BC000046 BC029364 BT009816 BX114065
RefSeq transcript (Entrez)NM_001039132 NM_001544 NM_022377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ICAM4
Cluster EST : UnigeneHs.706750 [ NCBI ]
CGAP (NCI)Hs.706750
Alternative Splicing GalleryENSG00000105371
Gene ExpressionICAM4 [ NCBI-GEO ]   ICAM4 [ EBI - ARRAY_EXPRESS ]   ICAM4 [ SEEK ]   ICAM4 [ MEM ]
Gene Expression Viewer (FireBrowse)ICAM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3386
GTEX Portal (Tissue expression)ICAM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14773   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14773  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14773
Splice isoforms : SwissVarQ14773
PhosPhoSitePlusQ14773
Domains : Interpro (EBI)ICAM_N    ICAM_VCAM_N    Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)ICAM_N (PF03921)   
Domain families : Pfam (NCBI)pfam03921   
Conserved Domain (NCBI)ICAM4
DMDM Disease mutations3386
Blocks (Seattle)ICAM4
SuperfamilyQ14773
Human Protein AtlasENSG00000105371
Peptide AtlasQ14773
HPRD00198
IPIIPI00000118   IPI00396335   IPI00386904   
Protein Interaction databases
DIP (DOE-UCLA)Q14773
IntAct (EBI)Q14773
FunCoupENSG00000105371
BioGRIDICAM4
STRING (EMBL)ICAM4
ZODIACICAM4
Ontologies - Pathways
QuickGOQ14773
Ontology : AmiGOintegrin binding  extracellular space  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  integral component of membrane  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  
Ontology : EGO-EBIintegrin binding  extracellular space  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  integral component of membrane  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  
NDEx NetworkICAM4
Atlas of Cancer Signalling NetworkICAM4
Wikipedia pathwaysICAM4
Orthology - Evolution
OrthoDB3386
GeneTree (enSembl)ENSG00000105371
Phylogenetic Trees/Animal Genes : TreeFamICAM4
HOVERGENQ14773
HOGENOMQ14773
Homologs : HomoloGeneICAM4
Homology/Alignments : Family Browser (UCSC)ICAM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerICAM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ICAM4
dbVarICAM4
ClinVarICAM4
1000_GenomesICAM4 
Exome Variant ServerICAM4
ExAC (Exome Aggregation Consortium)ICAM4 (select the gene name)
Genetic variants : HAPMAP3386
Genomic Variants (DGV)ICAM4 [DGVbeta]
DECIPHERICAM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisICAM4 
Mutations
ICGC Data PortalICAM4 
TCGA Data PortalICAM4 
Broad Tumor PortalICAM4
OASIS PortalICAM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICICAM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDICAM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ICAM4
DgiDB (Drug Gene Interaction Database)ICAM4
DoCM (Curated mutations)ICAM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ICAM4 (select a term)
intoGenICAM4
Cancer3DICAM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM111250    614088   
Orphanet
MedgenICAM4
Genetic Testing Registry ICAM4
NextProtQ14773 [Medical]
TSGene3386
GENETestsICAM4
Huge Navigator ICAM4 [HugePedia]
snp3D : Map Gene to Disease3386
BioCentury BCIQICAM4
ClinGenICAM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3386
Chemical/Pharm GKB GenePA29595
Clinical trialICAM4
Miscellaneous
canSAR (ICR)ICAM4 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineICAM4
EVEXICAM4
GoPubMedICAM4
iHOPICAM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:48 CEST 2017

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