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ICAM5 (intercellular adhesion molecule 5)

Identity

Other namesTLCN
TLN
HGNC (Hugo) ICAM5
LocusID (NCBI) 7087
Atlas_Id 40912
Location 19p13.2
Location_base_pair Starts at 10400655 and ends at 10407454 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ICAM5 (19p13.2) / ANO8 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ICAM5   5348
Cards
Entrez_Gene (NCBI)ICAM5  7087  intercellular adhesion molecule 5
GeneCards (Weizmann)ICAM5
Ensembl hg19 (Hinxton)ENSG00000105376 [Gene_View]  chr19:10400655-10407454 [Contig_View]  ICAM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105376 [Gene_View]  chr19:10400655-10407454 [Contig_View]  ICAM5 [Vega]
ICGC DataPortalENSG00000105376
TCGA cBioPortalICAM5
AceView (NCBI)ICAM5
Genatlas (Paris)ICAM5
WikiGenes7087
SOURCE (Princeton)ICAM5
Genomic and cartography
GoldenPath hg19 (UCSC)ICAM5  -     chr19:10400655-10407454 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ICAM5  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblICAM5 - 19p13.2 [CytoView hg19]  ICAM5 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIICAM5 [Mapview hg19]  ICAM5 [Mapview hg38]
OMIM601852   
Gene and transcription
Genbank (Entrez)AI199660 AI568610 AX746344 BC026338 BC030132
RefSeq transcript (Entrez)NM_003259
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ICAM5
Cluster EST : UnigeneHs.465862 [ NCBI ]
CGAP (NCI)Hs.465862
Alternative Splicing : Fast-db (Paris)GSHG0014571
Alternative Splicing GalleryENSG00000105376
Gene ExpressionICAM5 [ NCBI-GEO ]   ICAM5 [ EBI - ARRAY_EXPRESS ]   ICAM5 [ SEEK ]   ICAM5 [ MEM ]
Gene Expression Viewer (FireBrowse)ICAM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7087
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMF0 (Uniprot)
NextProtQ9UMF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMF0
Splice isoforms : SwissVarQ9UMF0 (Swissvar)
PhosPhoSitePlusQ9UMF0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)ICAM    ICAM_N    ICAM_VCAM_N    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)ICAM_N (PF03921)    Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam03921    pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations7087
Blocks (Seattle)ICAM5
PDB (SRS)3BN3    4OI9    4OIA    4OIB   
PDB (PDBSum)3BN3    4OI9    4OIA    4OIB   
PDB (IMB)3BN3    4OI9    4OIA    4OIB   
PDB (RSDB)3BN3    4OI9    4OIA    4OIB   
Structural Biology KnowledgeBase3BN3    4OI9    4OIA    4OIB   
SCOP (Structural Classification of Proteins)3BN3    4OI9    4OIA    4OIB   
CATH (Classification of proteins structures)3BN3    4OI9    4OIA    4OIB   
SuperfamilyQ9UMF0
Human Protein AtlasENSG00000105376
Peptide AtlasQ9UMF0
HPRD03509
IPIIPI00290456   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMF0
IntAct (EBI)Q9UMF0
FunCoupENSG00000105376
BioGRIDICAM5
STRING (EMBL)ICAM5
ZODIACICAM5
Ontologies - Pathways
QuickGOQ9UMF0
Ontology : AmiGOintegrin binding  protein binding  plasma membrane  integral component of plasma membrane  phagocytosis  cell adhesion  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  
Ontology : EGO-EBIintegrin binding  protein binding  plasma membrane  integral component of plasma membrane  phagocytosis  cell adhesion  single organismal cell-cell adhesion  extracellular matrix organization  regulation of immune response  
NDEx Network
Atlas of Cancer Signalling NetworkICAM5
Wikipedia pathwaysICAM5
Orthology - Evolution
OrthoDB7087
GeneTree (enSembl)ENSG00000105376
Phylogenetic Trees/Animal Genes : TreeFamICAM5
Homologs : HomoloGeneICAM5
Homology/Alignments : Family Browser (UCSC)ICAM5
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerICAM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ICAM5
dbVarICAM5
ClinVarICAM5
1000_GenomesICAM5 
Exome Variant ServerICAM5
ExAC (Exome Aggregation Consortium)ICAM5 (select the gene name)
SNP (GeneSNP Utah)ICAM5
SNP : HGBaseICAM5
Genetic variants : HAPMAPICAM5
Genomic Variants (DGV)ICAM5 [DGVbeta]
Mutations
ICGC Data PortalICAM5 
TCGA Data PortalICAM5 
Broad Tumor PortalICAM5
OASIS PortalICAM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICICAM5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ICAM5
DgiDB (Drug Gene Interaction Database)ICAM5
DoCM (Curated mutations)ICAM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ICAM5 (select a term)
intoGenICAM5
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:10400655-10407454
CONAN: Copy Number AnalysisICAM5 
Mutations and Diseases : HGMDICAM5
OMIM601852   
MedgenICAM5
Genetic Testing Registry ICAM5
NextProtQ9UMF0 [Medical]
TSGene7087
GENETestsICAM5
Huge Navigator ICAM5 [HugePedia]  ICAM5 [HugeCancerGEM]
snp3D : Map Gene to Disease7087
BioCentury BCIQICAM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7087
Chemical/Pharm GKB GenePA29596
Clinical trialICAM5
Miscellaneous
canSAR (ICR)ICAM5 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineICAM5
GoPubMedICAM5
iHOPICAM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:48:25 CEST 2016

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