Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ICAM5 (intercellular adhesion molecule 5, telencephalin)

Identity

Other namesTLCN
TLN
HGNC (Hugo) ICAM5
LocusID (NCBI) 7087
Location 19p13.2
Location_base_pair Starts at 10400655 and ends at 10407454 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ICAM5   5348
Cards
Entrez_Gene (NCBI)ICAM5  7087  intercellular adhesion molecule 5, telencephalin
GeneCards (Weizmann)ICAM5
Ensembl (Hinxton)ENSG00000105376 [Gene_View]  chr19:10400655-10407454 [Contig_View]  ICAM5 [Vega]
ICGC DataPortalENSG00000105376
AceView (NCBI)ICAM5
Genatlas (Paris)ICAM5
WikiGenes7087
SOURCE (Princeton)NM_003259
Genomic and cartography
GoldenPath (UCSC)ICAM5  -  19p13.2   chr19:10400655-10407454 +  19p13.2   [Description]    (hg19-Feb_2009)
EnsemblICAM5 - 19p13.2 [CytoView]
Mapping of homologs : NCBIICAM5 [Mapview]
OMIM601852   
Gene and transcription
Genbank (Entrez)AI199660 AI568610 AX746344 BC026338 BC030132
RefSeq transcript (Entrez)NM_003259
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838483 NW_004929414
Consensus coding sequences : CCDS (NCBI)ICAM5
Cluster EST : UnigeneHs.465862 [ NCBI ]
CGAP (NCI)Hs.465862
Alternative Splicing : Fast-db (Paris)GSHG0014571
Alternative Splicing GalleryENSG00000105376
Gene ExpressionICAM5 [ NCBI-GEO ]     ICAM5 [ SEEK ]   ICAM5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMF0 (Uniprot)
NextProtQ9UMF0  [Medical]
With graphics : InterProQ9UMF0
Splice isoforms : SwissVarQ9UMF0 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)ICAM    ICAM_N    ICAM_VCAM_N    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Related proteins : CluSTrQ9UMF0
Domain families : Pfam (Sanger)ICAM_N (PF03921)   
Domain families : Pfam (NCBI)pfam03921   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
DMDM Disease mutations7087
Blocks (Seattle)Q9UMF0
PDB (SRS)3BN3   
PDB (PDBSum)3BN3   
PDB (IMB)3BN3   
PDB (RSDB)3BN3   
Human Protein AtlasENSG00000105376
Peptide AtlasQ9UMF0
HPRD03509
IPIIPI00290456   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMF0
IntAct (EBI)Q9UMF0
FunCoupENSG00000105376
BioGRIDICAM5
IntegromeDBICAM5
STRING (EMBL)ICAM5
Ontologies - Pathways
QuickGOQ9UMF0
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  phagocytosis  single organismal cell-cell adhesion  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  phagocytosis  single organismal cell-cell adhesion  
Protein Interaction DatabaseICAM5
Wikipedia pathwaysICAM5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ICAM5
SNP (GeneSNP Utah)ICAM5
SNP : HGBaseICAM5
Genetic variants : HAPMAPICAM5
1000_GenomesICAM5 
ICGC programENSG00000105376 
CONAN: Copy Number AnalysisICAM5 
Somatic Mutations in Cancer : COSMICICAM5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)19:10400655-10407454
Mutations and Diseases : HGMDICAM5
OMIM601852   
MedgenICAM5
GENETestsICAM5
Disease Genetic AssociationICAM5
Huge Navigator ICAM5 [HugePedia]  ICAM5 [HugeCancerGEM]
Genomic VariantsICAM5  ICAM5 [DGVbeta]
Exome VariantICAM5
dbVarICAM5
ClinVarICAM5
snp3D : Map Gene to Disease7087
General knowledge
Homologs : HomoloGeneICAM5
Homology/Alignments : Family Browser (UCSC)ICAM5
Phylogenetic Trees/Animal Genes : TreeFamICAM5
Chemical/Protein Interactions : CTD7087
Chemical/Pharm GKB GenePA29596
Clinical trialICAM5
Cancer Resource (Charite)ENSG00000105376
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineICAM5
GoPubMedICAM5
iHOPICAM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:33:05 CET 2014

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