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ICE1 (interactor of little elongation complex ELL subunit 1)

Identity

Alias_namesKIAA0947
KIAA0947
Other alias
HGNC (Hugo) ICE1
LocusID (NCBI) 23379
Atlas_Id 64491
Location 5p15.32  [Link to chromosome band 5p15]
Location_base_pair Starts at 5422673 and ends at 5490234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ICE1 (5p15.32) / MARCH11 (5p15.1)ICE1 (5p15.32) / PAFAH1B3 (19q13.2)PAFAH1B3 (19q13.2) / ICE1 (5p15.32)
PDXDC1 (16p13.11) / ICE1 (5p15.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ICE1   29154
Cards
Entrez_Gene (NCBI)ICE1  23379  interactor of little elongation complex ELL subunit 1
AliasesKIAA0947
GeneCards (Weizmann)ICE1
Ensembl hg19 (Hinxton)ENSG00000164151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164151 [Gene_View]  chr5:5422673-5490234 [Contig_View]  ICE1 [Vega]
ICGC DataPortalENSG00000164151
TCGA cBioPortalICE1
AceView (NCBI)ICE1
Genatlas (Paris)ICE1
WikiGenes23379
SOURCE (Princeton)ICE1
Genetics Home Reference (NIH)ICE1
Genomic and cartography
GoldenPath hg38 (UCSC)ICE1  -     chr5:5422673-5490234 +  5p15.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ICE1  -     5p15.32   [Description]    (hg19-Feb_2009)
EnsemblICE1 - 5p15.32 [CytoView hg19]  ICE1 - 5p15.32 [CytoView hg38]
Mapping of homologs : NCBIICE1 [Mapview hg19]  ICE1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB023164 AK024400 AK025279 AK095073 AK096615
RefSeq transcript (Entrez)NM_015325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ICE1
Cluster EST : UnigeneHs.449296 [ NCBI ]
CGAP (NCI)Hs.449296
Alternative Splicing GalleryENSG00000164151
Gene ExpressionICE1 [ NCBI-GEO ]   ICE1 [ EBI - ARRAY_EXPRESS ]   ICE1 [ SEEK ]   ICE1 [ MEM ]
Gene Expression Viewer (FireBrowse)ICE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23379
GTEX Portal (Tissue expression)ICE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2F5
Splice isoforms : SwissVarQ9Y2F5
PhosPhoSitePlusQ9Y2F5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ICE1
DMDM Disease mutations23379
Blocks (Seattle)ICE1
SuperfamilyQ9Y2F5
Human Protein AtlasENSG00000164151
Peptide AtlasQ9Y2F5
IPIIPI00738216   IPI00982940   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2F5
IntAct (EBI)Q9Y2F5
FunCoupENSG00000164151
BioGRIDICE1
STRING (EMBL)ICE1
ZODIACICE1
Ontologies - Pathways
QuickGOQ9Y2F5
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  transcription elongation factor complex  Cajal body  nuclear body  positive regulation of protein complex assembly  transcriptionally active chromatin  histone locus body  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  protein homodimerization activity  positive regulation of transcription from RNA polymerase III promoter  positive regulation of intracellular protein transport  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  transcription elongation factor complex  Cajal body  nuclear body  positive regulation of protein complex assembly  transcriptionally active chromatin  histone locus body  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  protein homodimerization activity  positive regulation of transcription from RNA polymerase III promoter  positive regulation of intracellular protein transport  
NDEx NetworkICE1
Atlas of Cancer Signalling NetworkICE1
Wikipedia pathwaysICE1
Orthology - Evolution
OrthoDB23379
GeneTree (enSembl)ENSG00000164151
Phylogenetic Trees/Animal Genes : TreeFamICE1
HOVERGENQ9Y2F5
HOGENOMQ9Y2F5
Homologs : HomoloGeneICE1
Homology/Alignments : Family Browser (UCSC)ICE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerICE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ICE1
dbVarICE1
ClinVarICE1
1000_GenomesICE1 
Exome Variant ServerICE1
ExAC (Exome Aggregation Consortium)ICE1 (select the gene name)
Genetic variants : HAPMAP23379
Genomic Variants (DGV)ICE1 [DGVbeta]
DECIPHERICE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisICE1 
Mutations
ICGC Data PortalICE1 
TCGA Data PortalICE1 
Broad Tumor PortalICE1
OASIS PortalICE1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDICE1
BioMutasearch ICE1
DgiDB (Drug Gene Interaction Database)ICE1
DoCM (Curated mutations)ICE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ICE1 (select a term)
intoGenICE1
Cancer3DICE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenICE1
Genetic Testing Registry ICE1
NextProtQ9Y2F5 [Medical]
TSGene23379
GENETestsICE1
Target ValidationICE1
Huge Navigator ICE1 [HugePedia]
snp3D : Map Gene to Disease23379
BioCentury BCIQICE1
ClinGenICE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23379
Chemical/Pharm GKB GenePA162411094
Clinical trialICE1
Miscellaneous
canSAR (ICR)ICE1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineICE1
EVEXICE1
GoPubMedICE1
iHOPICE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:04 CEST 2017

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