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ICE2 (interactor of little elongation complex ELL subunit 2)

Identity

Alias_namesNARG2
NMDA receptor regulated 2
Alias_symbol (synonym)FLJ11896
BRCC1
Other alias
HGNC (Hugo) ICE2
LocusID (NCBI) 79664
Atlas_Id 64492
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 60419609 and ends at 60479160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANXA2 (15q22.2) / ICE2 (15q22.2)ICE2 (15q22.2) / ALDH1A2 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ICE2   29885
Cards
Entrez_Gene (NCBI)ICE2  79664  interactor of little elongation complex ELL subunit 2
AliasesBRCC1; NARG2
GeneCards (Weizmann)ICE2
Ensembl hg19 (Hinxton)ENSG00000128915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128915 [Gene_View]  chr15:60419609-60479160 [Contig_View]  ICE2 [Vega]
ICGC DataPortalENSG00000128915
TCGA cBioPortalICE2
AceView (NCBI)ICE2
Genatlas (Paris)ICE2
WikiGenes79664
SOURCE (Princeton)ICE2
Genetics Home Reference (NIH)ICE2
Genomic and cartography
GoldenPath hg38 (UCSC)ICE2  -     chr15:60419609-60479160 -  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ICE2  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblICE2 - 15q22.2 [CytoView hg19]  ICE2 - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBIICE2 [Mapview hg19]  ICE2 [Mapview hg38]
OMIM610835   
Gene and transcription
Genbank (Entrez)AF502591 AK021958 AK055752 AK095389 AK127892
RefSeq transcript (Entrez)NM_001018089 NM_001276385 NM_024611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ICE2
Cluster EST : UnigeneHs.200943 [ NCBI ]
CGAP (NCI)Hs.200943
Alternative Splicing GalleryENSG00000128915
Gene ExpressionICE2 [ NCBI-GEO ]   ICE2 [ EBI - ARRAY_EXPRESS ]   ICE2 [ SEEK ]   ICE2 [ MEM ]
Gene Expression Viewer (FireBrowse)ICE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79664
GTEX Portal (Tissue expression)ICE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ659A1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ659A1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ659A1
Splice isoforms : SwissVarQ659A1
PhosPhoSitePlusQ659A1
Domains : Interpro (EBI)ICE2_C   
Domain families : Pfam (Sanger)NARG2_C (PF10505)   
Domain families : Pfam (NCBI)pfam10505   
Conserved Domain (NCBI)ICE2
DMDM Disease mutations79664
Blocks (Seattle)ICE2
SuperfamilyQ659A1
Human Protein AtlasENSG00000128915
Peptide AtlasQ659A1
HPRD17628
IPIIPI00470407   IPI00604683   IPI01022154   
Protein Interaction databases
DIP (DOE-UCLA)Q659A1
IntAct (EBI)Q659A1
FunCoupENSG00000128915
BioGRIDICE2
STRING (EMBL)ICE2
ZODIACICE2
Ontologies - Pathways
QuickGOQ659A1
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytosol  transcription elongation factor complex  transcription elongation factor complex  Cajal body  nuclear body  transcriptionally active chromatin  histone locus body  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  positive regulation of transcription from RNA polymerase III promoter  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytosol  transcription elongation factor complex  transcription elongation factor complex  Cajal body  nuclear body  transcriptionally active chromatin  histone locus body  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase II promoter  snRNA transcription from RNA polymerase III promoter  positive regulation of transcription from RNA polymerase III promoter  
NDEx NetworkICE2
Atlas of Cancer Signalling NetworkICE2
Wikipedia pathwaysICE2
Orthology - Evolution
OrthoDB79664
GeneTree (enSembl)ENSG00000128915
Phylogenetic Trees/Animal Genes : TreeFamICE2
HOVERGENQ659A1
HOGENOMQ659A1
Homologs : HomoloGeneICE2
Homology/Alignments : Family Browser (UCSC)ICE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerICE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ICE2
dbVarICE2
ClinVarICE2
1000_GenomesICE2 
Exome Variant ServerICE2
ExAC (Exome Aggregation Consortium)ICE2 (select the gene name)
Genetic variants : HAPMAP79664
Genomic Variants (DGV)ICE2 [DGVbeta]
DECIPHERICE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisICE2 
Mutations
ICGC Data PortalICE2 
TCGA Data PortalICE2 
Broad Tumor PortalICE2
OASIS PortalICE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDICE2
BioMutasearch ICE2
DgiDB (Drug Gene Interaction Database)ICE2
DoCM (Curated mutations)ICE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ICE2 (select a term)
intoGenICE2
Cancer3DICE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610835   
Orphanet
MedgenICE2
Genetic Testing Registry ICE2
NextProtQ659A1 [Medical]
TSGene79664
GENETestsICE2
Target ValidationICE2
Huge Navigator ICE2 [HugePedia]
snp3D : Map Gene to Disease79664
BioCentury BCIQICE2
ClinGenICE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79664
Chemical/Pharm GKB GenePA134960292
Clinical trialICE2
Miscellaneous
canSAR (ICR)ICE2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineICE2
EVEXICE2
GoPubMedICE2
iHOPICE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:05 CEST 2017

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