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IDI1 (isopentenyl-diphosphate delta isomerase 1)

Identity

Alias_namesisopentenyl-diphosphate delta isomerase
Other aliasIPP1
IPPI1
HGNC (Hugo) IDI1
LocusID (NCBI) 3422
Atlas_Id 64497
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1039420 and ends at 1056716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IDI1 (10p15.3) / CRTC3 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IDI1   5387
Cards
Entrez_Gene (NCBI)IDI1  3422  isopentenyl-diphosphate delta isomerase 1
AliasesIPP1; IPPI1
GeneCards (Weizmann)IDI1
Ensembl hg19 (Hinxton)ENSG00000067064 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067064 [Gene_View]  chr10:1039420-1056716 [Contig_View]  IDI1 [Vega]
ICGC DataPortalENSG00000067064
TCGA cBioPortalIDI1
AceView (NCBI)IDI1
Genatlas (Paris)IDI1
WikiGenes3422
SOURCE (Princeton)IDI1
Genetics Home Reference (NIH)IDI1
Genomic and cartography
GoldenPath hg38 (UCSC)IDI1  -     chr10:1039420-1056716 -  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IDI1  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblIDI1 - 10p15.3 [CytoView hg19]  IDI1 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBIIDI1 [Mapview hg19]  IDI1 [Mapview hg38]
OMIM604055   
Gene and transcription
Genbank (Entrez)AF271720 AI305202 AK022980 AK222875 AK303669
RefSeq transcript (Entrez)NM_001317955 NM_001317956 NM_001317957 NM_004508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IDI1
Cluster EST : UnigeneHs.661502 [ NCBI ]
CGAP (NCI)Hs.661502
Alternative Splicing GalleryENSG00000067064
Gene ExpressionIDI1 [ NCBI-GEO ]   IDI1 [ EBI - ARRAY_EXPRESS ]   IDI1 [ SEEK ]   IDI1 [ MEM ]
Gene Expression Viewer (FireBrowse)IDI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3422
GTEX Portal (Tissue expression)IDI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13907   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13907  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13907
Splice isoforms : SwissVarQ13907
Catalytic activity : Enzyme5.3.3.2 [ Enzyme-Expasy ]   5.3.3.25.3.3.2 [ IntEnz-EBI ]   5.3.3.2 [ BRENDA ]   5.3.3.2 [ KEGG ]   
PhosPhoSitePlusQ13907
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)IsopentenylPP_isomerase_typ1    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)IDI1
DMDM Disease mutations3422
Blocks (Seattle)IDI1
PDB (SRS)2DHO    2I6K    2ICJ    2ICK   
PDB (PDBSum)2DHO    2I6K    2ICJ    2ICK   
PDB (IMB)2DHO    2I6K    2ICJ    2ICK   
PDB (RSDB)2DHO    2I6K    2ICJ    2ICK   
Structural Biology KnowledgeBase2DHO    2I6K    2ICJ    2ICK   
SCOP (Structural Classification of Proteins)2DHO    2I6K    2ICJ    2ICK   
CATH (Classification of proteins structures)2DHO    2I6K    2ICJ    2ICK   
SuperfamilyQ13907
Human Protein AtlasENSG00000067064
Peptide AtlasQ13907
HPRD07235
IPIIPI00645307   IPI00220014   IPI00953196   IPI00640997   
Protein Interaction databases
DIP (DOE-UCLA)Q13907
IntAct (EBI)Q13907
FunCoupENSG00000067064
BioGRIDIDI1
STRING (EMBL)IDI1
ZODIACIDI1
Ontologies - Pathways
QuickGOQ13907
Ontology : AmiGOisopentenyl-diphosphate delta-isomerase activity  peroxisome  cytosol  cholesterol biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Ontology : EGO-EBIisopentenyl-diphosphate delta-isomerase activity  peroxisome  cytosol  cholesterol biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Pathways : KEGGTerpenoid backbone biosynthesis   
NDEx NetworkIDI1
Atlas of Cancer Signalling NetworkIDI1
Wikipedia pathwaysIDI1
Orthology - Evolution
OrthoDB3422
GeneTree (enSembl)ENSG00000067064
Phylogenetic Trees/Animal Genes : TreeFamIDI1
HOVERGENQ13907
HOGENOMQ13907
Homologs : HomoloGeneIDI1
Homology/Alignments : Family Browser (UCSC)IDI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIDI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IDI1
dbVarIDI1
ClinVarIDI1
1000_GenomesIDI1 
Exome Variant ServerIDI1
ExAC (Exome Aggregation Consortium)IDI1 (select the gene name)
Genetic variants : HAPMAP3422
Genomic Variants (DGV)IDI1 [DGVbeta]
DECIPHERIDI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIDI1 
Mutations
ICGC Data PortalIDI1 
TCGA Data PortalIDI1 
Broad Tumor PortalIDI1
OASIS PortalIDI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIDI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIDI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch IDI1
DgiDB (Drug Gene Interaction Database)IDI1
DoCM (Curated mutations)IDI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IDI1 (select a term)
intoGenIDI1
Cancer3DIDI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604055   
Orphanet
MedgenIDI1
Genetic Testing Registry IDI1
NextProtQ13907 [Medical]
TSGene3422
GENETestsIDI1
Huge Navigator IDI1 [HugePedia]
snp3D : Map Gene to Disease3422
BioCentury BCIQIDI1
ClinGenIDI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3422
Chemical/Pharm GKB GenePA29635
Clinical trialIDI1
Miscellaneous
canSAR (ICR)IDI1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIDI1
EVEXIDI1
GoPubMedIDI1
iHOPIDI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:16:28 CEST 2017

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