Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IDI2-AS1 (IDI2 antisense RNA 1)

Identity

Alias_namesC10orf110
IDI2-AS
chromosome 10 open reading frame 110
IDI2 antisense RNA (non-protein coding)
IDI2 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)HT009
Em:AC022536.4
Other alias
HGNC (Hugo) IDI2-AS1
LocusID (NCBI) 55853
Atlas_Id 64499
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1022666 and ends at 1044197 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IDI2-AS1 (10p15.3) / STK40 (1p34.3)UBE2S (19q13.42) / IDI2-AS1 (10p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IDI2-AS1   30885
Cards
Entrez_Gene (NCBI)IDI2-AS1  55853  IDI2 antisense RNA 1
AliasesC10orf110; HT009; IDI2-AS
GeneCards (Weizmann)IDI2-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:1022666-1044197 [Contig_View]  IDI2-AS1 [Vega]
TCGA cBioPortalIDI2-AS1
AceView (NCBI)IDI2-AS1
Genatlas (Paris)IDI2-AS1
WikiGenes55853
SOURCE (Princeton)IDI2-AS1
Genetics Home Reference (NIH)IDI2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)IDI2-AS1  -     chr10:1022666-1044197 +  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IDI2-AS1  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblIDI2-AS1 - 10p15.3 [CytoView hg19]  IDI2-AS1 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBIIDI2-AS1 [Mapview hg19]  IDI2-AS1 [Mapview hg38]
OMIM615391   
Gene and transcription
Genbank (Entrez)AF220183 AK314921 BC018729 BC050694 BC104155
RefSeq transcript (Entrez)NM_018470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IDI2-AS1
Cluster EST : UnigeneHs.728538 [ NCBI ]
CGAP (NCI)Hs.728538
Gene ExpressionIDI2-AS1 [ NCBI-GEO ]   IDI2-AS1 [ EBI - ARRAY_EXPRESS ]   IDI2-AS1 [ SEEK ]   IDI2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)IDI2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55853
GTEX Portal (Tissue expression)IDI2-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ38
Splice isoforms : SwissVarQ9NZ38
PhosPhoSitePlusQ9NZ38
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IDI2-AS1
DMDM Disease mutations55853
Blocks (Seattle)IDI2-AS1
SuperfamilyQ9NZ38
Peptide AtlasQ9NZ38
HPRD12561
IPIIPI00020526   IPI00880181   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ38
IntAct (EBI)Q9NZ38
BioGRIDIDI2-AS1
STRING (EMBL)IDI2-AS1
ZODIACIDI2-AS1
Ontologies - Pathways
QuickGOQ9NZ38
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIDI2-AS1
Atlas of Cancer Signalling NetworkIDI2-AS1
Wikipedia pathwaysIDI2-AS1
Orthology - Evolution
OrthoDB55853
Phylogenetic Trees/Animal Genes : TreeFamIDI2-AS1
HOVERGENQ9NZ38
HOGENOMQ9NZ38
Homologs : HomoloGeneIDI2-AS1
Homology/Alignments : Family Browser (UCSC)IDI2-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIDI2-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IDI2-AS1
dbVarIDI2-AS1
ClinVarIDI2-AS1
1000_GenomesIDI2-AS1 
Exome Variant ServerIDI2-AS1
ExAC (Exome Aggregation Consortium)IDI2-AS1 (select the gene name)
Genetic variants : HAPMAP55853
Genomic Variants (DGV)IDI2-AS1 [DGVbeta]
DECIPHERIDI2-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIDI2-AS1 
Mutations
ICGC Data PortalIDI2-AS1 
TCGA Data PortalIDI2-AS1 
Broad Tumor PortalIDI2-AS1
OASIS PortalIDI2-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIDI2-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IDI2-AS1
DgiDB (Drug Gene Interaction Database)IDI2-AS1
DoCM (Curated mutations)IDI2-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IDI2-AS1 (select a term)
intoGenIDI2-AS1
Cancer3DIDI2-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615391   
Orphanet
MedgenIDI2-AS1
Genetic Testing Registry IDI2-AS1
NextProtQ9NZ38 [Medical]
TSGene55853
GENETestsIDI2-AS1
Target ValidationIDI2-AS1
Huge Navigator IDI2-AS1 [HugePedia]
snp3D : Map Gene to Disease55853
BioCentury BCIQIDI2-AS1
ClinGenIDI2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55853
Chemical/Pharm GKB GenePA134897349
Clinical trialIDI2-AS1
Miscellaneous
canSAR (ICR)IDI2-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIDI2-AS1
EVEXIDI2-AS1
GoPubMedIDI2-AS1
iHOPIDI2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:53:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.