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IDI2 (isopentenyl-diphosphate delta isomerase 2)

Identity

Alias (NCBI)IPPI2
HGNC (Hugo) IDI2
HGNC Alias symbIPPI2
LocusID (NCBI) 91734
Atlas_Id 64498
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1018911 and ends at 1025859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IDI2   23487
Cards
Entrez_Gene (NCBI)IDI2    isopentenyl-diphosphate delta isomerase 2
AliasesIPPI2
GeneCards (Weizmann)IDI2
Ensembl hg19 (Hinxton)ENSG00000148377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148377 [Gene_View]  ENSG00000148377 [Sequence]  chr10:1018911-1025859 [Contig_View]  IDI2 [Vega]
ICGC DataPortalENSG00000148377
TCGA cBioPortalIDI2
AceView (NCBI)IDI2
Genatlas (Paris)IDI2
SOURCE (Princeton)IDI2
Genetics Home Reference (NIH)IDI2
Genomic and cartography
GoldenPath hg38 (UCSC)IDI2  -     chr10:1018911-1025859 -  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IDI2  -     10p15.3   [Description]    (hg19-Feb_2009)
GoldenPathIDI2 - 10p15.3 [CytoView hg19]  IDI2 - 10p15.3 [CytoView hg38]
ImmunoBaseENSG00000148377
Genome Data Viewer NCBIIDI2 [Mapview hg19]  
OMIM615389   
Gene and transcription
Genbank (Entrez)AF271725 AK056950 BC017778 BC040651
RefSeq transcript (Entrez)NM_033261
Consensus coding sequences : CCDS (NCBI)IDI2
Gene ExpressionIDI2 [ NCBI-GEO ]   IDI2 [ EBI - ARRAY_EXPRESS ]   IDI2 [ SEEK ]   IDI2 [ MEM ]
Gene Expression Viewer (FireBrowse)IDI2 [ Firebrowse - Broad ]
GenevisibleExpression of IDI2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91734
GTEX Portal (Tissue expression)IDI2
Human Protein AtlasENSG00000148377-IDI2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXS1
PhosPhoSitePlusQ9BXS1
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)IsopentenylPP_isomerase_typ1    NUDIX_hydrolase-like_dom_sf    NUDIX_hydrolase_dom   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)IDI2
PDB (RSDB)2PNY   
PDB Europe2PNY   
PDB (PDBSum)2PNY   
PDB (IMB)2PNY   
Structural Biology KnowledgeBase2PNY   
SCOP (Structural Classification of Proteins)2PNY   
CATH (Classification of proteins structures)2PNY   
SuperfamilyQ9BXS1
AlphaFold pdb e-kbQ9BXS1   
Human Protein Atlas [tissue]ENSG00000148377-IDI2 [tissue]
HPRD17127
Protein Interaction databases
DIP (DOE-UCLA)Q9BXS1
IntAct (EBI)Q9BXS1
BioGRIDIDI2
STRING (EMBL)IDI2
ZODIACIDI2
Ontologies - Pathways
QuickGOQ9BXS1
Ontology : AmiGOisopentenyl-diphosphate delta-isomerase activity  isopentenyl-diphosphate delta-isomerase activity  protein binding  cytoplasm  peroxisome  cytosol  cholesterol biosynthetic process  isoprenoid biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  intracellular membrane-bounded organelle  isopentenyl diphosphate metabolic process  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Ontology : EGO-EBIisopentenyl-diphosphate delta-isomerase activity  isopentenyl-diphosphate delta-isomerase activity  protein binding  cytoplasm  peroxisome  cytosol  cholesterol biosynthetic process  isoprenoid biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  intracellular membrane-bounded organelle  isopentenyl diphosphate metabolic process  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Pathways : KEGGBiosynthesis of steroids    Terpenoid biosynthesis   
NDEx NetworkIDI2
Atlas of Cancer Signalling NetworkIDI2
Wikipedia pathwaysIDI2
Orthology - Evolution
OrthoDB91734
GeneTree (enSembl)ENSG00000148377
Phylogenetic Trees/Animal Genes : TreeFamIDI2
Homologs : HomoloGeneIDI2
Homology/Alignments : Family Browser (UCSC)IDI2
Gene fusions - Rearrangements
Fusion : QuiverIDI2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIDI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IDI2
dbVarIDI2
ClinVarIDI2
MonarchIDI2
1000_GenomesIDI2 
Exome Variant ServerIDI2
GNOMAD BrowserENSG00000148377
Varsome BrowserIDI2
ACMGIDI2 variants
VarityQ9BXS1
Genomic Variants (DGV)IDI2 [DGVbeta]
DECIPHERIDI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIDI2 
Mutations
ICGC Data PortalIDI2 
TCGA Data PortalIDI2 
Broad Tumor PortalIDI2
OASIS PortalIDI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIDI2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIDI2
Mutations and Diseases : HGMDIDI2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIDI2
DgiDB (Drug Gene Interaction Database)IDI2
DoCM (Curated mutations)IDI2
CIViC (Clinical Interpretations of Variants in Cancer)IDI2
Cancer3DIDI2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615389   
Orphanet
DisGeNETIDI2
MedgenIDI2
Genetic Testing Registry IDI2
NextProtQ9BXS1 [Medical]
GENETestsIDI2
Target ValidationIDI2
Huge Navigator IDI2 [HugePedia]
ClinGenIDI2
Clinical trials, drugs, therapy
MyCancerGenomeIDI2
Protein Interactions : CTDIDI2
Pharm GKB GenePA134935136
PharosQ9BXS1
Clinical trialIDI2
Miscellaneous
canSAR (ICR)IDI2
HarmonizomeIDI2
DataMed IndexIDI2
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIDI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:26 CEST 2021

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