Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IDI2 (isopentenyl-diphosphate delta isomerase 2)

Identity

Alias_symbol (synonym)IPPI2
Other alias
HGNC (Hugo) IDI2
LocusID (NCBI) 91734
Atlas_Id 64498
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1018907 and ends at 1025859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IDI2   23487
Cards
Entrez_Gene (NCBI)IDI2  91734  isopentenyl-diphosphate delta isomerase 2
AliasesIPPI2
GeneCards (Weizmann)IDI2
Ensembl hg19 (Hinxton)ENSG00000148377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148377 [Gene_View]  chr10:1018907-1025859 [Contig_View]  IDI2 [Vega]
ICGC DataPortalENSg0000 18377
TCGA cBioPortalIDI2
AceView (NCBI)IDI2
Genatlas (Paris)IDI2
WikiGenes91734
SOURCE (Princeton)IDI2
Genetics Home Reference (NIH)IDI2
Genomic and cartography
GoldenPath hg38 (UCSC)IDI2  -     chr10:1018907-1025859 -  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IDI2  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblIDI2 - 10p15.3 [CytoView hg19]  IDI2 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBIIDI2 [Mapview hg19]  IDI2 [Mapview hg38]
OMIM615389   
Gene and transcription
Genbank (Entrez)AF271725 AK056950 BC017778 BC040651 HQ447793
RefSeq transcript (Entrez)NM_033261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IDI2
Cluster EST : UnigeneHs.591325 [ NCBI ]
CGAP (NCI)Hs.591325
Alternative Splicing GalleryENSG00000148377
Gene ExpressionIDI2 [ NCBI-GEO ]   IDI2 [ EBI - ARRAY_EXPRESS ]   IDI2 [ SEEK ]   IDI2 [ MEM ]
Gene Expression Viewer (FireBrowse)IDI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91734
GTEX Portal (Tissue expression)IDI2
Human Protein AtlasENSG00000148377-IDI2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXS1
Splice isoforms : SwissVarQ9BXS1
Catalytic activity : Enzyme5.3.3.2 [ Enzyme-Expasy ]   5.3.3.25.3.3.2 [ IntEnz-EBI ]   5.3.3.2 [ BRENDA ]   5.3.3.2 [ KEGG ]   
PhosPhoSitePlusQ9BXS1
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)IsopentenylPP_isomerase_typ1    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)IDI2
DMDM Disease mutations91734
Blocks (Seattle)IDI2
PDB (SRS)2PNY   
PDB (PDBSum)2PNY   
PDB (IMB)2PNY   
PDB (RSDB)2PNY   
Structural Biology KnowledgeBase2PNY   
SCOP (Structural Classification of Proteins)2PNY   
CATH (Classification of proteins structures)2PNY   
SuperfamilyQ9BXS1
Human Protein Atlas [tissue]ENSG00000148377-IDI2 [tissue]
Peptide AtlasQ9BXS1
HPRD17127
IPIIPI00018740   IPI00921114   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXS1
IntAct (EBI)Q9BXS1
FunCoupENSG00000148377
BioGRIDIDI2
STRING (EMBL)IDI2
ZODIACIDI2
Ontologies - Pathways
QuickGOQ9BXS1
Ontology : AmiGOisopentenyl-diphosphate delta-isomerase activity  peroxisome  cytosol  cholesterol biosynthetic process  isoprenoid biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  isopentenyl diphosphate metabolic process  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Ontology : EGO-EBIisopentenyl-diphosphate delta-isomerase activity  peroxisome  cytosol  cholesterol biosynthetic process  isoprenoid biosynthetic process  isopentenyl diphosphate biosynthetic process  hydrolase activity  isopentenyl diphosphate metabolic process  metal ion binding  dimethylallyl diphosphate biosynthetic process  
Pathways : KEGGTerpenoid backbone biosynthesis   
NDEx NetworkIDI2
Atlas of Cancer Signalling NetworkIDI2
Wikipedia pathwaysIDI2
Orthology - Evolution
OrthoDB91734
GeneTree (enSembl)ENSG00000148377
Phylogenetic Trees/Animal Genes : TreeFamIDI2
HOVERGENQ9BXS1
HOGENOMQ9BXS1
Homologs : HomoloGeneIDI2
Homology/Alignments : Family Browser (UCSC)IDI2
Gene fusions - Rearrangements
Fusion: Tumor Portal IDI2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIDI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IDI2
dbVarIDI2
ClinVarIDI2
1000_GenomesIDI2 
Exome Variant ServerIDI2
ExAC (Exome Aggregation Consortium)ENSG00000148377
GNOMAD BrowserENSG00000148377
Genetic variants : HAPMAP91734
Genomic Variants (DGV)IDI2 [DGVbeta]
DECIPHERIDI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIDI2 
Mutations
ICGC Data PortalIDI2 
TCGA Data PortalIDI2 
Broad Tumor PortalIDI2
OASIS PortalIDI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIDI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIDI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IDI2
DgiDB (Drug Gene Interaction Database)IDI2
DoCM (Curated mutations)IDI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IDI2 (select a term)
intoGenIDI2
Cancer3DIDI2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615389   
Orphanet
MedgenIDI2
Genetic Testing Registry IDI2
NextProtQ9BXS1 [Medical]
TSGene91734
GENETestsIDI2
Target ValidationIDI2
Huge Navigator IDI2 [HugePedia]
snp3D : Map Gene to Disease91734
BioCentury BCIQIDI2
ClinGenIDI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91734
Chemical/Pharm GKB GenePA134935136
Clinical trialIDI2
Miscellaneous
canSAR (ICR)IDI2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIDI2
EVEXIDI2
GoPubMedIDI2
iHOPIDI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:51:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.