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IER2 (immediate early response 2)

Identity

Alias_symbol (synonym)ETR101
Other alias
HGNC (Hugo) IER2
LocusID (NCBI) 9592
Atlas_Id 40918
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 13261282 and ends at 13265718 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IER2 (19p13.2) / NRP2 (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IER2   28871
Cards
Entrez_Gene (NCBI)IER2  9592  immediate early response 2
AliasesETR101
GeneCards (Weizmann)IER2
Ensembl hg19 (Hinxton)ENSG00000160888 [Gene_View]  chr19:13261282-13265718 [Contig_View]  IER2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160888 [Gene_View]  chr19:13261282-13265718 [Contig_View]  IER2 [Vega]
ICGC DataPortalENSG00000160888
TCGA cBioPortalIER2
AceView (NCBI)IER2
Genatlas (Paris)IER2
WikiGenes9592
SOURCE (Princeton)IER2
Genetics Home Reference (NIH)IER2
Genomic and cartography
GoldenPath hg19 (UCSC)IER2  -     chr19:13261282-13265718 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IER2  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblIER2 - 19p13.2 [CytoView hg19]  IER2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIIER2 [Mapview hg19]  IER2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC003625 BC072432 BC110647 BT019466 CR450352
RefSeq transcript (Entrez)NM_004907
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)IER2
Cluster EST : UnigeneHs.501629 [ NCBI ]
CGAP (NCI)Hs.501629
Alternative Splicing GalleryENSG00000160888
Gene ExpressionIER2 [ NCBI-GEO ]   IER2 [ EBI - ARRAY_EXPRESS ]   IER2 [ SEEK ]   IER2 [ MEM ]
Gene Expression Viewer (FireBrowse)IER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9592
GTEX Portal (Tissue expression)IER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTL4
Splice isoforms : SwissVarQ9BTL4
PhosPhoSitePlusQ9BTL4
Domains : Interpro (EBI)IER   
Domain families : Pfam (Sanger)IER (PF05760)   
Domain families : Pfam (NCBI)pfam05760   
Conserved Domain (NCBI)IER2
DMDM Disease mutations9592
Blocks (Seattle)IER2
SuperfamilyQ9BTL4
Human Protein AtlasENSG00000160888
Peptide AtlasQ9BTL4
HPRD09997
IPIIPI00006876   IPI00978707   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTL4
IntAct (EBI)Q9BTL4
FunCoupENSG00000160888
BioGRIDIER2
STRING (EMBL)IER2
ZODIACIER2
Ontologies - Pathways
QuickGOQ9BTL4
Ontology : AmiGODNA binding  nucleus  nucleoplasm  cytoplasm  neuron differentiation  cell motility  response to fibroblast growth factor  
Ontology : EGO-EBIDNA binding  nucleus  nucleoplasm  cytoplasm  neuron differentiation  cell motility  response to fibroblast growth factor  
NDEx NetworkIER2
Atlas of Cancer Signalling NetworkIER2
Wikipedia pathwaysIER2
Orthology - Evolution
OrthoDB9592
GeneTree (enSembl)ENSG00000160888
Phylogenetic Trees/Animal Genes : TreeFamIER2
HOVERGENQ9BTL4
HOGENOMQ9BTL4
Homologs : HomoloGeneIER2
Homology/Alignments : Family Browser (UCSC)IER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IER2
dbVarIER2
ClinVarIER2
1000_GenomesIER2 
Exome Variant ServerIER2
ExAC (Exome Aggregation Consortium)IER2 (select the gene name)
Genetic variants : HAPMAP9592
Genomic Variants (DGV)IER2 [DGVbeta]
DECIPHER (Syndromes)19:13261282-13265718  ENSG00000160888
CONAN: Copy Number AnalysisIER2 
Mutations
ICGC Data PortalIER2 
TCGA Data PortalIER2 
Broad Tumor PortalIER2
OASIS PortalIER2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIER2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIER2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IER2
DgiDB (Drug Gene Interaction Database)IER2
DoCM (Curated mutations)IER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IER2 (select a term)
intoGenIER2
Cancer3DIER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIER2
Genetic Testing Registry IER2
NextProtQ9BTL4 [Medical]
TSGene9592
GENETestsIER2
Huge Navigator IER2 [HugePedia]
snp3D : Map Gene to Disease9592
BioCentury BCIQIER2
ClinGenIER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9592
Chemical/Pharm GKB GenePA134982230
Clinical trialIER2
Miscellaneous
canSAR (ICR)IER2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIER2
EVEXIER2
GoPubMedIER2
iHOPIER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:39 CEST 2017

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