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IER3IP1 (immediate early response 3 interacting protein 1)

Identity

Other aliasHSPC039
MEDS
PRO2309
HGNC (Hugo) IER3IP1
LocusID (NCBI) 51124
Atlas_Id 47376
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 47155019 and ends at 47176374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBXL3 (13q22.3) / IER3IP1 (18q21.1)GALNT18 (11p15.3) / IER3IP1 (18q21.1)IER3IP1 (18q21.1) / HDHD2 (18q21.1)
IER3IP1 (18q21.1) / IER3IP1 (18q21.1)IER3IP1 (18q21.1) / LOC100505549 (18q21.31)IER3IP1 (18q21.1) / PAX7 (1p36.13)
NSMCE2 (8q24.13) / IER3IP1 (18q21.1)GALNTL4 IER3IP1 18q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IER3IP1   18550
Cards
Entrez_Gene (NCBI)IER3IP1  51124  immediate early response 3 interacting protein 1
AliasesHSPC039; MEDS; PRO2309
GeneCards (Weizmann)IER3IP1
Ensembl hg19 (Hinxton)ENSG00000134049 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134049 [Gene_View]  chr18:47155019-47176374 [Contig_View]  IER3IP1 [Vega]
ICGC DataPortalENSG00000134049
TCGA cBioPortalIER3IP1
AceView (NCBI)IER3IP1
Genatlas (Paris)IER3IP1
WikiGenes51124
SOURCE (Princeton)IER3IP1
Genetics Home Reference (NIH)IER3IP1
Genomic and cartography
GoldenPath hg38 (UCSC)IER3IP1  -     chr18:47155019-47176374 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IER3IP1  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblIER3IP1 - 18q21.1 [CytoView hg19]  IER3IP1 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIIER3IP1 [Mapview hg19]  IER3IP1 [Mapview hg38]
OMIM609382   614231   
Gene and transcription
Genbank (Entrez)AA211693 AF119875 AF125100 AF164798 AF371963
RefSeq transcript (Entrez)NM_016097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IER3IP1
Cluster EST : UnigeneHs.130917 [ NCBI ]
CGAP (NCI)Hs.130917
Alternative Splicing GalleryENSG00000134049
Gene ExpressionIER3IP1 [ NCBI-GEO ]   IER3IP1 [ EBI - ARRAY_EXPRESS ]   IER3IP1 [ SEEK ]   IER3IP1 [ MEM ]
Gene Expression Viewer (FireBrowse)IER3IP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51124
GTEX Portal (Tissue expression)IER3IP1
Human Protein AtlasENSG00000134049-IER3IP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5U9
Splice isoforms : SwissVarQ9Y5U9
PhosPhoSitePlusQ9Y5U9
Domains : Interpro (EBI)Yos1   
Domain families : Pfam (Sanger)Yos1 (PF08571)   
Domain families : Pfam (NCBI)pfam08571   
Conserved Domain (NCBI)IER3IP1
DMDM Disease mutations51124
Blocks (Seattle)IER3IP1
SuperfamilyQ9Y5U9
Human Protein Atlas [tissue]ENSG00000134049-IER3IP1 [tissue]
Peptide AtlasQ9Y5U9
HPRD13727
IPIIPI00007166   IPI00815868   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5U9
IntAct (EBI)Q9Y5U9
FunCoupENSG00000134049
BioGRIDIER3IP1
STRING (EMBL)IER3IP1
ZODIACIER3IP1
Ontologies - Pathways
QuickGOQ9Y5U9
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  ER to Golgi vesicle-mediated transport  membrane  ER to Golgi transport vesicle  integral component of Golgi membrane  regulation of fibroblast apoptotic process  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  Golgi apparatus  ER to Golgi vesicle-mediated transport  membrane  ER to Golgi transport vesicle  integral component of Golgi membrane  regulation of fibroblast apoptotic process  
NDEx NetworkIER3IP1
Atlas of Cancer Signalling NetworkIER3IP1
Wikipedia pathwaysIER3IP1
Orthology - Evolution
OrthoDB51124
GeneTree (enSembl)ENSG00000134049
Phylogenetic Trees/Animal Genes : TreeFamIER3IP1
HOVERGENQ9Y5U9
HOGENOMQ9Y5U9
Homologs : HomoloGeneIER3IP1
Homology/Alignments : Family Browser (UCSC)IER3IP1
Gene fusions - Rearrangements
Fusion : MitelmanGALNT18/IER3IP1 [11p15.3/18q21.1]  [t(11;18)(p15;q21)]  
Fusion : MitelmanIER3IP1/HDHD2 [18q21.1/18q21.1]  [del(18)(q21)]  [del(18)(q21q21)]  
Fusion: TCGA_MDACCGALNTL4 IER3IP1 18q21.1 BLCA
Tumor Fusion PortalIER3IP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIER3IP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IER3IP1
dbVarIER3IP1
ClinVarIER3IP1
1000_GenomesIER3IP1 
Exome Variant ServerIER3IP1
ExAC (Exome Aggregation Consortium)ENSG00000134049
GNOMAD BrowserENSG00000134049
Genetic variants : HAPMAP51124
Genomic Variants (DGV)IER3IP1 [DGVbeta]
DECIPHERIER3IP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIER3IP1 
Mutations
ICGC Data PortalIER3IP1 
TCGA Data PortalIER3IP1 
Broad Tumor PortalIER3IP1
OASIS PortalIER3IP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIER3IP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIER3IP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IER3IP1
DgiDB (Drug Gene Interaction Database)IER3IP1
DoCM (Curated mutations)IER3IP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IER3IP1 (select a term)
intoGenIER3IP1
Cancer3DIER3IP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609382    614231   
Orphanet21232   
DisGeNETIER3IP1
MedgenIER3IP1
Genetic Testing Registry IER3IP1
NextProtQ9Y5U9 [Medical]
TSGene51124
GENETestsIER3IP1
Target ValidationIER3IP1
Huge Navigator IER3IP1 [HugePedia]
snp3D : Map Gene to Disease51124
BioCentury BCIQIER3IP1
ClinGenIER3IP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51124
Chemical/Pharm GKB GenePA134899219
Clinical trialIER3IP1
Miscellaneous
canSAR (ICR)IER3IP1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIER3IP1
EVEXIER3IP1
GoPubMedIER3IP1
iHOPIER3IP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:17:13 CET 2017

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