Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IER5L (immediate early response 5 like)

Identity

Alias_symbol (synonym)bA247A12.2
Other alias
HGNC (Hugo) IER5L
LocusID (NCBI) 389792
Atlas_Id 46919
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129175552 and ends at 129178261 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IER5L (9q34.11) / NEMF (14q21.3)IER5L (9q34.11) / RRAGC (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IER5L   23679
Cards
Entrez_Gene (NCBI)IER5L  389792  immediate early response 5 like
AliasesbA247A12.2
GeneCards (Weizmann)IER5L
Ensembl hg19 (Hinxton)ENSG00000188483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188483 [Gene_View]  chr9:129175552-129178261 [Contig_View]  IER5L [Vega]
ICGC DataPortalENSG00000188483
TCGA cBioPortalIER5L
AceView (NCBI)IER5L
Genatlas (Paris)IER5L
WikiGenes389792
SOURCE (Princeton)IER5L
Genetics Home Reference (NIH)IER5L
Genomic and cartography
GoldenPath hg38 (UCSC)IER5L  -     chr9:129175552-129178261 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IER5L  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblIER5L - 9q34.11 [CytoView hg19]  IER5L - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIIER5L [Mapview hg19]  IER5L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC013070 BC064028 BM763373 BQ574938 BU676697
RefSeq transcript (Entrez)NM_203434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IER5L
Cluster EST : UnigeneHs.529857 [ NCBI ]
CGAP (NCI)Hs.529857
Alternative Splicing GalleryENSG00000188483
Gene ExpressionIER5L [ NCBI-GEO ]   IER5L [ EBI - ARRAY_EXPRESS ]   IER5L [ SEEK ]   IER5L [ MEM ]
Gene Expression Viewer (FireBrowse)IER5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389792
GTEX Portal (Tissue expression)IER5L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T953   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T953  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T953
Splice isoforms : SwissVarQ5T953
PhosPhoSitePlusQ5T953
Domains : Interpro (EBI)IER   
Domain families : Pfam (Sanger)IER (PF05760)   
Domain families : Pfam (NCBI)pfam05760   
Conserved Domain (NCBI)IER5L
DMDM Disease mutations389792
Blocks (Seattle)IER5L
SuperfamilyQ5T953
Human Protein AtlasENSG00000188483
Peptide AtlasQ5T953
HPRD17128
IPIIPI00401073   IPI00892732   
Protein Interaction databases
DIP (DOE-UCLA)Q5T953
IntAct (EBI)Q5T953
FunCoupENSG00000188483
BioGRIDIER5L
STRING (EMBL)IER5L
ZODIACIER5L
Ontologies - Pathways
QuickGOQ5T953
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIER5L
Atlas of Cancer Signalling NetworkIER5L
Wikipedia pathwaysIER5L
Orthology - Evolution
OrthoDB389792
GeneTree (enSembl)ENSG00000188483
Phylogenetic Trees/Animal Genes : TreeFamIER5L
HOVERGENQ5T953
HOGENOMQ5T953
Homologs : HomoloGeneIER5L
Homology/Alignments : Family Browser (UCSC)IER5L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIER5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IER5L
dbVarIER5L
ClinVarIER5L
1000_GenomesIER5L 
Exome Variant ServerIER5L
ExAC (Exome Aggregation Consortium)IER5L (select the gene name)
Genetic variants : HAPMAP389792
Genomic Variants (DGV)IER5L [DGVbeta]
DECIPHERIER5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIER5L 
Mutations
ICGC Data PortalIER5L 
TCGA Data PortalIER5L 
Broad Tumor PortalIER5L
OASIS PortalIER5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIER5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIER5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IER5L
DgiDB (Drug Gene Interaction Database)IER5L
DoCM (Curated mutations)IER5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IER5L (select a term)
intoGenIER5L
Cancer3DIER5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIER5L
Genetic Testing Registry IER5L
NextProtQ5T953 [Medical]
TSGene389792
GENETestsIER5L
Target ValidationIER5L
Huge Navigator IER5L [HugePedia]
snp3D : Map Gene to Disease389792
BioCentury BCIQIER5L
ClinGenIER5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389792
Chemical/Pharm GKB GenePA134879111
Clinical trialIER5L
Miscellaneous
canSAR (ICR)IER5L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIER5L
EVEXIER5L
GoPubMedIER5L
iHOPIER5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:03:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.